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ON464759.1__UTV60895.1__JDFnp1_107__00107
Bact-VirON464759.1__UTV60895.1__JDFnp1_107__00107
Identity
- Accession:
- ON464759 ↗
- Kingdom:
- phage
Quality
84.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-52_80-103_159-173
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 29.0 | 3.37e-01 | 82.4% | 67.7% |
| 3tthB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 31.0 | 2.56e-01 | 73.6% | 30.5% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4106741 | 6155.1.1.8 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › Pyr4-TMTC | 0.58 | 34.0 | 3.50e-01 | 83.5% | 60.0% |
| 4030194 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.51 | 37.0 | 2.44e-01 | 97.8% | 18.6% |
| 4014117 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.50 | 35.0 | 2.46e-01 | 73.6% | 98.4% |
D2
medium
residues 53-79_104-158
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ox6D00 | 1.10.3100.10 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein | 0.63 | 54.0 | 4.23e-01 | 90.2% | 48.4% |
| 2iqiB00 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.61 | 52.0 | 4.14e-01 | 95.1% | 97.1% |
| 1d4oA00 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.60 | 38.0 | 2.94e-01 | 82.9% | 29.4% |
| 4fdiA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.59 | 53.0 | 3.42e-01 | 100.0% | 41.6% |
| 3lxqA02 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.59 | 52.0 | 3.60e-01 | 98.8% | 40.8% |
| 4z5qA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.58 | 50.0 | 3.30e-01 | 96.3% | 76.0% |
| 2xzmV01 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.57 | 39.0 | 4.46e-01 | 85.4% | 95.1% |
| 4axsA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.56 | 47.0 | 3.24e-01 | 93.9% | 32.6% |
| 4jc0A03 | 3.30.750.200 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.55 | 43.0 | 3.84e-01 | 96.3% | 58.3% |
| 3gedA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 45.0 | 3.17e-01 | 89.0% | 45.9% |
| 3n74A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 43.0 | 3.15e-01 | 90.2% | 32.2% |
| 4ys0A02 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.53 | 44.0 | 3.49e-01 | 92.7% | 97.1% |
| 3i4fC00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 43.0 | 3.08e-01 | 90.2% | 48.8% |
| 1ulyA02 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.52 | 34.0 | 3.19e-01 | 90.2% | 53.5% |
| 6n2aB02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.52 | 39.0 | 2.87e-01 | 87.8% | 28.8% |
| 1l1lA02 | 3.30.1620.10 | Alpha Beta › 2-Layer Sandwich › b-12 dependent (class ii) ribonucleotide reductase, Chain A, Domain 2 › b-12 dependent (class ii) ribonucleotide reductase, Chain A, Domain 2 | 0.52 | 41.0 | 3.77e-01 | 91.5% | 64.3% |
| 2xtuA00 | 1.20.1540.10 | Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like | 0.52 | 42.0 | 3.25e-01 | 89.0% | 67.4% |
| 1o3uA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.52 | 39.0 | 3.42e-01 | 79.3% | 97.5% |
| 3fj1A02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.51 | 42.0 | 3.65e-01 | 93.9% | 86.8% |
| 4hyqA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 42.0 | 3.09e-01 | 93.9% | 40.7% |
| 1wj5A01 | 1.10.10.980 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain | 0.50 | 41.0 | 3.96e-01 | 91.5% | 87.8% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 35.0 | 3.11e-01 | 82.9% | 50.4% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 317770 | 101.1.4.22 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF4447 | 0.64 | 54.0 | 4.22e-01 | 90.2% | 47.9% |
| 4940888 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.59 | 50.0 | 3.94e-01 | 93.9% | 96.6% |
| 4972398 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 49.0 | 3.90e-01 | 97.6% | 46.9% |
| 3183799 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.58 | 53.0 | 3.72e-01 | 100.0% | 56.2% |
| 3865283 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.57 | 48.0 | 3.47e-01 | 91.5% | 77.9% |
| 4423395 | 5064.1.1.1 ↗ | alpha bundles › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › PsaL | 0.55 | 46.0 | 3.70e-01 | 92.7% | 68.5% |
| 134055 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.55 | 45.0 | 3.17e-01 | 89.0% | 45.9% |
| 4979039 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.54 | 49.0 | 3.61e-01 | 98.8% | 51.2% |
| 4934194 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.53 | 47.0 | 3.54e-01 | 98.8% | 51.0% |
| 3601871 | 5073.1.1.0 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M | 0.53 | 46.0 | 2.90e-01 | 100.0% | 74.9% |
| 3334905 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.52 | 44.0 | 2.85e-01 | 95.1% | 50.1% |
| 3816176 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.52 | 33.0 | 3.08e-01 | 100.0% | 51.4% |
| 3061339 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.51 | 35.0 | 2.31e-01 | 70.7% | 52.4% |
| 4992299 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.51 | 39.0 | 2.82e-01 | 80.5% | 44.2% |
| 3181073 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.51 | 41.0 | 3.38e-01 | 90.2% | 47.1% |
| 3730012 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.50 | 43.0 | 3.03e-01 | 100.0% | 35.4% |
| 3719807 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.50 | 43.0 | 3.60e-01 | 93.9% | 77.1% |