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ON464759.1__UTV60909.1__JDFnp1_121__00121

Bact-Vir

ON464759.1__UTV60909.1__JDFnp1_121__00121

Identity

Accession:
ON464759 ↗
Kingdom:
phage

Quality

92.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fusobacterium_phage_JD-Fnp1

TaxID: 2950463

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-84
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.70 60.0 5.28e-01 95.1% 69.2%
3cs1A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.69 61.0 5.54e-01 97.6% 80.7%
1ls1A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.62 54.0 5.29e-01 100.0% 95.5%
1td2A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 52.0 3.63e-01 97.6% 89.5%
4yt3A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 49.0 3.18e-01 90.2% 65.5%
3mgxB00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 49.0 3.20e-01 91.5% 50.1%
1ztdA00 1.10.1520.20 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III 0.59 40.0 3.58e-01 72.0% 86.4%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.58 42.0 3.97e-01 75.6% 84.7%
4a15A03 1.10.275.40 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › 0.58 45.0 3.79e-01 84.1% 50.0%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.58 45.0 3.40e-01 86.6% 50.0%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 38.0 3.85e-01 80.5% 67.5%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 45.0 4.17e-01 91.5% 86.8%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 4.33e-01 80.5% 92.7%
3futA02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.56 40.0 4.30e-01 100.0% 95.4%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 4.10e-01 82.9% 74.4%
1qr0A01 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.56 40.0 3.57e-01 76.8% 57.6%
2scpA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 46.0 3.76e-01 97.6% 54.0%
2uuqA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 41.0 2.79e-01 90.2% 64.0%
3lvyE01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.52 40.0 3.24e-01 84.1% 64.2%
5v89A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 38.0 3.74e-01 100.0% 77.3%
1kvkA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 39.0 2.94e-01 86.6% 36.1%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3596205 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.74 55.0 5.21e-01 78.0% 77.9%
3386119 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.67 49.0 3.56e-01 76.8% 28.6%
4394038 148.1.3.3 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PCP_red 0.66 46.0 5.07e-01 78.0% 98.3%
4935264 148.1.3.29 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › LonB_AAA-LID 0.66 49.0 4.54e-01 82.9% 61.9%
5028302 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.64 53.0 3.55e-01 91.5% 95.3%
3486698 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.63 46.0 3.82e-01 78.0% 88.0%
3700992 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 53.0 5.19e-01 100.0% 90.0%
3885920 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.62 52.0 4.14e-01 100.0% 43.8%
3611455 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 50.0 5.13e-01 98.8% 92.5%
3900651 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.60 49.0 4.72e-01 97.6% 76.8%
3897149 101.1.2.500 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30898 0.60 46.0 4.35e-01 86.6% 76.2%
3742315 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 52.0 4.78e-01 100.0% 74.5%
3524656 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.59 49.0 4.35e-01 96.3% 61.6%
3718172 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 49.0 4.46e-01 97.6% 72.2%
3608942 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 45.0 4.18e-01 97.6% 64.5%
3676003 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.57 49.0 4.15e-01 100.0% 57.1%
4561762 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 46.0 4.22e-01 96.3% 76.5%
3654708 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.55 47.0 3.96e-01 100.0% 54.0%
3670518 108.1.1.113 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6 0.55 47.0 4.07e-01 100.0% 60.0%
3371727 601.17.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › Group V grass pollen allergen › Group V grass pollen allergen › DUF4378 0.55 46.0 4.24e-01 97.6% 92.7%
3593668 304.103.1.0 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like 0.55 42.0 3.10e-01 85.4% 50.6%
3607342 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 46.0 4.40e-01 100.0% 88.0%
3576823 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.54 41.0 3.55e-01 85.4% 51.9%
4363157 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.54 45.0 3.64e-01 97.6% 54.0%
4363156 108.1.1.104 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_8 0.53 44.0 3.57e-01 97.6% 54.0%
3927517 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.53 43.0 4.13e-01 93.9% 84.0%
4139100 1.1.1.7 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.52 38.0 2.73e-01 76.8% 74.4%
3453721 191.1.1.62 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › DUF4378 0.52 44.0 4.02e-01 100.0% 94.8%
3605896 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 44.0 4.07e-01 100.0% 86.1%
3394135 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.51 41.0 4.02e-01 92.7% 88.9%