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ON464759.1__UTV60912.1__JDFnp1_124__00124

Bact-Vir

ON464759.1__UTV60912.1__JDFnp1_124__00124

Identity

Accession:
ON464759 ↗
Kingdom:
phage

Quality

89.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-121
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.78 26.0 2.94e-01 75.4% 38.5%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.58 38.0 4.24e-01 87.3% 86.8%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 34.0 3.34e-01 83.9% 54.6%
4yzrA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.55 42.0 2.96e-01 81.4% 73.2%
6ldiF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 34.0 3.72e-01 95.8% 79.2%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 32.0 3.42e-01 71.2% 67.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5006471 5079.1.1.1 alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE 0.57 44.0 3.93e-01 83.1% 92.9%
4030349 7575.1.1.11 a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › PF31181 0.56 49.0 3.79e-01 94.9% 87.9%
3875981 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.53 46.0 3.48e-01 97.5% 83.0%
4078439 152.1.2.1 alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.52 30.0 3.71e-01 90.7% 100.0%
D2 high residues 132-223
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.76 50.0 5.54e-01 87.0% 86.3%
3evzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.73 52.0 4.26e-01 92.4% 41.0%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.72 49.0 5.58e-01 91.3% 97.0%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.71 47.0 5.27e-01 100.0% 90.0%
3zigA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.70 47.0 4.99e-01 87.0% 78.0%
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.68 46.0 4.64e-01 90.2% 68.1%
6lynD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 41.0 4.20e-01 88.0% 63.2%
3h0dA01 3.30.56.130 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Transcriptional regulator CtsR, winged HTH domain 0.67 48.0 5.35e-01 95.7% 98.6%
2pjdA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 43.0 3.64e-01 88.0% 39.7%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.64 45.0 4.21e-01 98.9% 58.8%
3mczA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 51.0 3.77e-01 87.0% 35.4%
2avdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 47.0 3.57e-01 87.0% 33.3%
4u1qA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 47.0 3.78e-01 87.0% 39.6%
3hnrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 49.0 3.95e-01 87.0% 47.7%
4nzrM03 3.30.110.180 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.62 50.0 4.59e-01 89.1% 68.3%
1s2oA02 3.90.1070.10 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.61 40.0 4.44e-01 93.5% 85.9%
3ntvA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 48.0 3.68e-01 85.9% 37.6%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 37.0 4.01e-01 88.0% 77.0%
2pcrA02 3.40.190.80 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.59 36.0 3.42e-01 83.7% 49.6%
3ou2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 46.0 3.61e-01 87.0% 40.7%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 4.02e-01 93.5% 70.8%
5tvfD00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.57 44.0 3.22e-01 85.9% 28.9%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.57 46.0 3.81e-01 89.1% 82.0%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 37.0 3.76e-01 85.9% 68.2%
8k5lA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 44.0 3.55e-01 87.0% 48.5%
4hkqA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.56 38.0 3.33e-01 96.7% 44.4%
1i72A00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.56 43.0 3.24e-01 85.9% 31.9%
2joeA01 3.30.1830.10 Alpha Beta › 2-Layer Sandwich › YehR-like fold › YehR-like 0.56 41.0 3.66e-01 85.9% 55.5%
1q5yC00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.55 39.0 4.06e-01 92.4% 82.9%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.87e-01 100.0% 71.0%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 41.0 3.90e-01 97.8% 66.7%
1xauA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.74e-01 88.0% 66.3%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.30e-01 100.0% 45.1%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.71e-01 100.0% 66.7%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.68e-01 100.0% 69.4%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.53 41.0 4.36e-01 97.8% 97.5%
3zxoA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.52 42.0 3.81e-01 87.0% 86.4%
1zkdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 42.0 3.47e-01 88.0% 55.2%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.52 36.0 3.77e-01 98.9% 81.2%
3eo4D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 45.0 3.76e-01 96.7% 96.3%
4pcaB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 43.0 3.40e-01 97.8% 47.7%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.52e-01 98.9% 65.4%
4ymhD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 3.28e-01 95.7% 44.4%
4dcmA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 43.0 3.47e-01 93.5% 66.5%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.54e-01 100.0% 64.3%
4zkfA01 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 43.0 3.01e-01 96.7% 52.3%
2vd5B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 36.0 2.90e-01 87.0% 36.4%
1ka8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 4.21e-01 97.8% 87.0%
3hr6A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 42.0 3.55e-01 92.4% 54.1%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 44.0 3.45e-01 100.0% 83.5%
4iw7A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 33.0 3.14e-01 73.9% 54.8%
2g47A03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.50 37.0 2.90e-01 81.5% 78.0%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3403645 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.76 47.0 5.61e-01 93.5% 95.0%
4989805 328.5.1.0 a+b two layers › IF3-like › SirA-like › SirA-like 0.74 47.0 5.21e-01 85.9% 84.3%
3386910 328.5.1.1 a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.74 48.0 5.30e-01 89.1% 85.7%
3357930 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.73 55.0 5.91e-01 100.0% 97.3%
3250910 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.72 51.0 5.70e-01 97.8% 98.6%
3552466 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.72 51.0 5.63e-01 97.8% 97.1%
4981701 328.5.1.1 a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.71 46.0 5.27e-01 89.1% 92.3%
3581967 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.69 45.0 5.17e-01 92.4% 95.4%
4938255 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.69 45.0 4.82e-01 100.0% 77.5%
4993130 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.68 36.0 3.97e-01 73.9% 62.7%
3272830 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.67 57.0 5.79e-01 93.5% 95.6%
3494198 328.7.1.0 a+b two layers › IF3-like › Smr domain › Smr domain 0.66 53.0 4.15e-01 89.1% 41.6%
4987374 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.66 37.0 4.05e-01 72.8% 66.7%
3290652 306.2.1.0 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.65 47.0 4.76e-01 95.7% 76.7%
4968594 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.65 41.0 4.55e-01 89.1% 80.0%
2389407 2003.1.5.14 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 0.64 47.0 3.59e-01 87.0% 33.8%
4981202 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.64 40.0 4.39e-01 84.8% 77.3%
3177877 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.64 36.0 3.96e-01 81.5% 68.0%
5023543 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.64 44.0 4.31e-01 100.0% 65.0%
3686892 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.63 48.0 4.95e-01 89.1% 87.1%
3286580 304.159.1.1 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C 0.63 40.0 3.95e-01 73.9% 59.0%
3517969 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.63 54.0 5.41e-01 98.9% 92.6%
3738706 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.61 53.0 4.86e-01 94.6% 89.2%
2075041 3012.1.1.3 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › S6PP 0.61 40.0 4.44e-01 93.5% 85.9%
5083116 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.61 39.0 4.21e-01 84.8% 77.3%
3601401 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.60 48.0 3.84e-01 88.0% 42.6%
4945934 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.59 42.0 3.92e-01 93.5% 58.3%
5073115 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.59 47.0 3.72e-01 87.0% 40.7%
5039588 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.59 41.0 4.56e-01 96.7% 92.9%
3918547 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 51.0 3.90e-01 100.0% 54.7%
3226297 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.58 37.0 3.94e-01 94.6% 75.0%
2063291 331.10.1.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.57 44.0 4.06e-01 85.9% 62.9%
4484852 328.3.1.2 a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › mIF3 0.57 47.0 4.36e-01 89.1% 80.9%
4993334 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.57 44.0 3.53e-01 85.9% 40.2%
5034013 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.57 39.0 4.26e-01 96.7% 86.7%
5027191 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.57 38.0 4.23e-01 96.7% 90.0%
4979632 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.57 43.0 3.52e-01 100.0% 42.2%
4768398 331.10.1.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.56 43.0 3.36e-01 85.9% 36.5%
5082770 225.2.1.1 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 0.55 44.0 3.54e-01 85.9% 78.3%
4975568 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.55 47.0 3.73e-01 96.7% 47.5%
5080331 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 44.0 4.27e-01 100.0% 77.1%
3268629 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 4.40e-01 87.0% 100.0%
3742321 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 4.20e-01 89.1% 95.1%
3249761 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.52 43.0 4.51e-01 96.7% 96.5%
3971485 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.51 44.0 3.52e-01 95.7% 89.7%
3999969 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.51 36.0 3.60e-01 85.9% 72.6%
4003644 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.50 42.0 3.46e-01 93.5% 68.6%