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ON464759.1__UTV60942.1__JDFnp1_154__00154
Bact-VirON464759.1__UTV60942.1__JDFnp1_154__00154
Identity
- Accession:
- ON464759 ↗
- Kingdom:
- phage
Quality
77.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-85
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ksaA02 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.65 | 38.0 | 3.15e-01 | 72.5% | 34.3% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.63 | 52.0 | 4.90e-01 | 100.0% | 74.7% |
| 1dk8A02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.63 | 55.0 | 5.45e-01 | 100.0% | 90.6% |
| 2l7kA00 | 1.10.10.1850 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sporulation protein-like | 0.62 | 44.0 | 4.51e-01 | 100.0% | 80.3% |
| 1sgmA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 44.0 | 3.43e-01 | 96.2% | 33.2% |
| 2r0rB00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.61 | 50.0 | 5.13e-01 | 100.0% | 96.2% |
| 1su0B00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.61 | 44.0 | 3.76e-01 | 77.5% | 56.6% |
| 3u8vA00 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.60 | 51.0 | 5.12e-01 | 100.0% | 90.4% |
| 2kxpA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.60 | 45.0 | 4.11e-01 | 80.0% | 87.9% |
| 5e5bA02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.60 | 52.0 | 3.72e-01 | 100.0% | 46.9% |
| 4rayA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 46.0 | 4.58e-01 | 92.5% | 78.8% |
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.59 | 43.0 | 4.32e-01 | 78.8% | 79.5% |
| 4k7bA00 | 1.20.120.1740 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sodium ion translocating NADH-quinone reductase subunit C-like | 0.58 | 51.0 | 4.60e-01 | 100.0% | 71.2% |
| 7q37A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.58 | 49.0 | 3.70e-01 | 96.2% | 85.5% |
| 2ondA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 41.0 | 2.85e-01 | 80.0% | 20.1% |
| 2ygwA01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.57 | 43.0 | 3.48e-01 | 78.8% | 66.7% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.57 | 40.0 | 4.15e-01 | 73.8% | 93.2% |
| 1nzeA00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.57 | 48.0 | 4.42e-01 | 100.0% | 92.9% |
| 6z74C02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.57 | 47.0 | 3.88e-01 | 95.0% | 93.7% |
| 3zsuA00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.57 | 49.0 | 4.38e-01 | 100.0% | 93.2% |
| 3he0B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 42.0 | 3.26e-01 | 80.0% | 39.9% |
| 3eyyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 4.24e-01 | 92.5% | 82.9% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.55 | 40.0 | 4.18e-01 | 80.0% | 89.0% |
| 1cpqA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.55 | 47.0 | 4.13e-01 | 100.0% | 82.2% |
| 1cgnA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.54 | 47.0 | 4.12e-01 | 100.0% | 82.3% |
| 2o36A01 | 1.20.1050.40 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Endopeptidase. Chain P; domain 1 | 0.54 | 40.0 | 3.50e-01 | 81.2% | 68.8% |
| 6vvoE02 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.53 | 43.0 | 4.04e-01 | 90.0% | 81.8% |
| 5x56B00 | 1.20.58.810 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 | 0.53 | 47.0 | 4.32e-01 | 100.0% | 92.4% |
| 2l6jA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 36.0 | 3.30e-01 | 71.2% | 82.0% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.52 | 35.0 | 3.50e-01 | 78.8% | 67.9% |
| 6wfqC01 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.52 | 45.0 | 3.75e-01 | 96.2% | 87.3% |
| 4p9fA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.52 | 44.0 | 3.72e-01 | 98.8% | 91.0% |
| 3pm2A00 | 1.10.238.270 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.50 | 42.0 | 3.44e-01 | 100.0% | 89.0% |
| 2dg7A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 43.0 | 3.38e-01 | 98.8% | 57.0% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5011995 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.67 | 57.0 | 5.31e-01 | 100.0% | 75.0% |
| 4316799 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 57.0 | 5.57e-01 | 100.0% | 86.7% |
| 3565196 | 198.1.1.13 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, PF31278 | 0.63 | 53.0 | 5.20e-01 | 100.0% | 89.4% |
| 3927048 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 42.0 | 3.95e-01 | 88.7% | 56.0% |
| 3954766 | 191.1.1.18 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_14 | 0.62 | 46.0 | 3.93e-01 | 80.0% | 99.2% |
| 146956 | 3179.1.1.1 ↗ | alpha arrays › Uncharacterized protein CD1104.2 › Uncharacterized protein CD1104.2 › Uncharacterized protein CD1104.2 › TTRAP | 0.62 | 44.0 | 4.51e-01 | 100.0% | 80.3% |
| 3595443 | 172.1.1.0 ↗ | alpha complex topology › Citrate synthase-like › Citrate synthase › Citrate synthase | 0.62 | 50.0 | 3.21e-01 | 93.8% | 31.9% |
| 4244937 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.61 | 51.0 | 3.56e-01 | 98.8% | 27.9% |
| 1726573 | 601.18.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › PsbQ | 0.61 | 53.0 | 4.84e-01 | 100.0% | 94.6% |
| 4048397 | 601.18.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 | 0.61 | 54.0 | 5.04e-01 | 100.0% | 83.0% |
| 3458770 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 39.0 | 3.11e-01 | 76.2% | 31.2% |
| 3809686 | 601.18.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › PsbQ | 0.60 | 53.0 | 4.60e-01 | 100.0% | 78.4% |
| 4288241 | 601.18.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › PsbQ | 0.58 | 50.0 | 4.22e-01 | 100.0% | 73.6% |
| 3205696 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.58 | 46.0 | 3.92e-01 | 87.5% | 85.9% |
| 3940779 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 42.0 | 3.94e-01 | 78.8% | 90.5% |
| 3601886 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.58 | 44.0 | 3.96e-01 | 100.0% | 59.1% |
| 3495915 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.58 | 34.0 | 2.38e-01 | 100.0% | 17.7% |
| 3491658 | 5000.3.1.1 ↗ | alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Bcl-2 | 0.57 | 50.0 | 4.01e-01 | 100.0% | 83.6% |
| 4333411 | 601.18.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › CYP38_PsbQ-like | 0.57 | 50.0 | 4.33e-01 | 100.0% | 70.0% |
| 3818491 | 601.18.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › PsbQ | 0.57 | 48.0 | 4.12e-01 | 100.0% | 71.7% |
| 3320579 | 601.18.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › PsbQ | 0.57 | 48.0 | 4.06e-01 | 100.0% | 70.3% |
| 4938294 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.57 | 46.0 | 3.42e-01 | 88.7% | 39.9% |
| 4524417 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 49.0 | 4.73e-01 | 100.0% | 85.1% |
| 4195422 | 109.4.1.5 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 | 0.56 | 35.0 | 3.10e-01 | 80.0% | 41.7% |
| 3214098 | 330.1.1.24 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C | 0.56 | 48.0 | 4.34e-01 | 98.8% | 84.1% |
| 3970769 | 3921.1.1.0 ↗ | alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D | 0.56 | 48.0 | 3.65e-01 | 100.0% | 50.2% |
| 3922156 | 5067.1.1.3 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched | 0.54 | 44.0 | 3.66e-01 | 92.5% | 62.6% |
| 5062150 | 528.1.1.1 ↗ | alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH | 0.54 | 47.0 | 3.18e-01 | 100.0% | 45.9% |
| 3291236 | 191.1.1.18 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_14 | 0.54 | 39.0 | 3.29e-01 | 76.2% | 66.4% |
| 5003985 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.54 | 46.0 | 3.99e-01 | 100.0% | 65.9% |
| 4630964 | 610.1.1.1 ↗ | alpha arrays › ERP29 C domain-like › ERP29 C domain-like › ERP29 C domain-like › ERp29 | 0.54 | 42.0 | 4.33e-01 | 97.5% | 94.7% |
| 4971143 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.53 | 39.0 | 3.90e-01 | 78.8% | 92.9% |
| 5075377 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.53 | 39.0 | 3.82e-01 | 78.8% | 76.7% |
| 3888994 | 601.19.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Apolipoprotein | 0.53 | 45.0 | 3.80e-01 | 98.8% | 85.5% |
| 3737280 | 5067.1.1.5 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing | 0.53 | 42.0 | 3.15e-01 | 88.7% | 42.3% |
| 3699129 | 102.1.2.22 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Oscp1 | 0.52 | 44.0 | 3.63e-01 | 100.0% | 64.6% |
| 4012164 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.51 | 36.0 | 3.91e-01 | 77.5% | 93.8% |
| 3700000 | 3691.1.1.0 ↗ | alpha arrays › Phosphomannose isomerase helical insertion domain › Phosphomannose isomerase helical insertion domain › Phosphomannose isomerase helical insertion domain | 0.50 | 36.0 | 3.62e-01 | 75.0% | 76.2% |
| 3834235 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.50 | 38.0 | 2.35e-01 | 81.2% | 20.4% |