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ON464762.1__UTV61113.1__JDFnp5_7__00007

Bact-Vir

ON464762.1__UTV61113.1__JDFnp5_7__00007

Identity

Accession:
ON464762 ↗
Kingdom:
phage

Quality

93.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fusobacterium_phage_JD-Fnp5

TaxID: 2950467

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-63
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oyhA00 1.20.5.50 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.71 38.0 3.73e-01 95.0% 46.9%
1cs3A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.66 40.0 3.27e-01 93.3% 31.0%
3dv9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 48.0 4.68e-01 100.0% 75.7%
3s6iD01 1.10.1670.40 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › 0.62 53.0 4.62e-01 96.7% 67.0%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.59 40.0 3.78e-01 71.7% 81.1%
1z0xA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 47.0 4.68e-01 100.0% 87.9%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.58 39.0 3.29e-01 98.3% 41.7%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 49.0 4.40e-01 98.3% 70.2%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.56 40.0 3.60e-01 76.7% 58.4%
4uzzB00 6.10.250.2800 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 40.0 3.96e-01 83.3% 90.8%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.53 44.0 4.02e-01 100.0% 77.9%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3709807 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.66 55.0 3.39e-01 93.3% 17.7%
3666433 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 55.0 4.46e-01 100.0% 48.8%
2887752 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 50.0 4.85e-01 100.0% 78.9%
5030155 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 46.0 4.45e-01 100.0% 72.9%
4676615 2008.1.1.85 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII 0.60 52.0 3.42e-01 100.0% 94.2%
5002913 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.58 50.0 3.68e-01 100.0% 45.9%
3390891 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.58 48.0 4.29e-01 100.0% 64.4%
3789792 164.1.1.0 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.58 48.0 4.28e-01 100.0% 83.2%
5003363 7000.1.1.1 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › HTH_OrfB_IS605 0.57 48.0 4.30e-01 100.0% 81.1%
4084484 6155.1.1.17 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › LAB_N 0.56 40.0 3.69e-01 95.0% 60.0%
3669577 4202.1.1.0 ↗ alpha duplicates or obligate multimers › Hermes dimerisation domain › Hermes dimerisation domain › Hermes dimerisation domain 0.56 45.0 4.45e-01 100.0% 86.2%
3661620 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 40.0 3.93e-01 95.0% 72.3%
3369321 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.55 40.0 4.00e-01 93.3% 78.3%
4999336 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.55 45.0 4.14e-01 100.0% 90.6%
3517882 2484.1.1.215 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27041 0.54 37.0 2.28e-01 86.7% 10.2%
3412920 3913.1.1.0 ↗ extended segments › Intraflagellar transport protein 52 C-terminal domain › Intraflagellar transport protein 52 C-terminal domain › Intraflagellar transport protein 52 C-terminal domain 0.54 42.0 3.77e-01 86.7% 75.3%
3314239 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 42.0 4.25e-01 100.0% 88.3%
3435792 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.54 43.0 2.73e-01 93.3% 17.1%
3347629 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.53 43.0 4.33e-01 100.0% 93.3%
3928350 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 44.0 2.98e-01 98.3% 24.2%
3436723 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 37.0 3.72e-01 93.3% 76.7%
3934751 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 42.0 4.21e-01 100.0% 91.7%
3355033 4202.1.1.0 ↗ alpha duplicates or obligate multimers › Hermes dimerisation domain › Hermes dimerisation domain › Hermes dimerisation domain 0.52 41.0 4.16e-01 100.0% 93.3%
3351860 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 39.0 3.78e-01 100.0% 75.7%
3907900 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.52 38.0 3.88e-01 100.0% 85.0%
3891361 4202.1.1.0 ↗ alpha duplicates or obligate multimers › Hermes dimerisation domain › Hermes dimerisation domain › Hermes dimerisation domain 0.51 39.0 3.92e-01 96.7% 85.0%