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ON464762.1__UTV61114.1__JDFnp5_8__00008

Bact-Vir

ON464762.1__UTV61114.1__JDFnp5_8__00008

Identity

Accession:
ON464762 ↗
Kingdom:
phage

Quality

91.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-55
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kwmA01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.82 66.0 5.61e-01 88.9% 75.0%
1jqgA01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.82 67.0 5.62e-01 90.7% 67.0%
3mahA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.78 69.0 6.36e-01 100.0% 90.0%
2fwrA01 3.40.1170.30 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › 0.78 64.0 6.36e-01 100.0% 86.0%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.76 66.0 5.00e-01 100.0% 88.1%
2mdaA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.76 65.0 5.49e-01 100.0% 87.4%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.74 62.0 4.53e-01 100.0% 89.7%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 57.0 4.89e-01 88.9% 67.7%
3devA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.73 64.0 5.01e-01 100.0% 51.7%
6bq9A02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.72 62.0 5.25e-01 100.0% 85.1%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.72 62.0 5.53e-01 100.0% 86.1%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 56.0 4.83e-01 88.9% 76.4%
2wb6A00 3.90.1150.90 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.71 57.0 4.49e-01 88.9% 42.1%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 52.0 3.89e-01 79.6% 70.8%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 52.0 4.84e-01 87.0% 82.9%
1yreC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 48.0 3.38e-01 77.8% 76.4%
3q23A02 3.30.70.2440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 51.0 3.83e-01 88.9% 43.6%
1ydlA00 3.30.70.1220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like 0.65 45.0 4.17e-01 74.1% 70.4%
2jubA02 2.20.25.370 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ipi1, C-terminal domain 0.65 43.0 4.83e-01 94.4% 97.4%
3cpxB01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.62 52.0 3.49e-01 100.0% 43.0%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.62 52.0 4.41e-01 96.3% 93.8%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 48.0 3.84e-01 90.7% 69.1%
3rq1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.62 52.0 3.90e-01 100.0% 37.3%
1ibaA00 3.30.1360.60 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB 0.62 46.0 4.19e-01 83.3% 75.6%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.62 50.0 4.17e-01 94.4% 68.9%
2qlzA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 3.97e-01 72.2% 77.8%
4n3pA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.60 45.0 3.07e-01 83.3% 46.7%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.59 48.0 3.25e-01 92.6% 30.0%
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.59 47.0 4.04e-01 98.1% 83.2%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 3.21e-01 81.5% 35.3%
3kzgA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 40.0 3.09e-01 72.2% 65.9%
1sseB00 1.10.238.100 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › YAP1 redox domain. Chain B 0.58 45.0 3.94e-01 87.0% 65.1%
4ak8A00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.58 41.0 3.21e-01 77.8% 98.5%
1rp0A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 3.11e-01 96.3% 79.2%
2greA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 46.0 3.15e-01 100.0% 70.8%
3nftA00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.56 46.0 3.04e-01 100.0% 92.4%
4kibA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.70e-01 88.9% 64.6%
1q0sA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 38.0 2.89e-01 72.2% 94.5%
3slhA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.56 41.0 2.84e-01 83.3% 25.7%
6mtzA01 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.55 43.0 3.59e-01 90.7% 58.9%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.19e-01 83.3% 41.6%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.27e-01 87.0% 45.5%
7ox5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 3.82e-01 100.0% 93.2%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.58e-01 88.9% 65.6%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.54 40.0 3.74e-01 85.2% 86.1%
3dkqA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.54 39.0 2.82e-01 81.5% 100.0%
4n13A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 39.0 3.21e-01 85.2% 89.7%
3gy9A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 39.0 2.97e-01 83.3% 56.8%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 2.96e-01 88.9% 37.7%
4lmoA00 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.51 36.0 2.34e-01 74.1% 15.9%
4yzgA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 44.0 2.81e-01 100.0% 60.9%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.36e-01 88.9% 61.1%
5w1aB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 37.0 3.58e-01 83.3% 92.3%
7qjnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 2.84e-01 100.0% 85.3%
8oh9B05 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 38.0 3.76e-01 92.6% 81.7%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4997049 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.85 77.0 7.03e-01 100.0% 77.1%
4977810 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.84 77.0 6.82e-01 100.0% 73.3%
4932042 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.81 72.0 5.32e-01 100.0% 39.1%
5037711 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.76 61.0 5.77e-01 88.9% 86.2%
4646162 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.76 61.0 5.82e-01 90.7% 84.6%
5013656 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.75 58.0 5.70e-01 87.0% 80.0%
3253771 4271.1.1.3 alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.74 66.0 4.28e-01 100.0% 34.3%
4999340 241.11.1.6 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › TfoX_N 0.74 63.0 5.26e-01 100.0% 65.0%
4959522 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.74 63.0 4.90e-01 100.0% 44.2%
5040192 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.74 63.0 5.37e-01 100.0% 73.1%
4933147 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.73 60.0 4.81e-01 90.7% 50.5%
185162 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.73 64.0 4.94e-01 100.0% 49.6%
4941492 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.72 57.0 5.60e-01 88.9% 90.0%
4033357 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.72 63.0 4.92e-01 100.0% 51.7%
146926 3066.1.1.0 0.72 57.0 4.74e-01 88.9% 49.5%
5001322 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.72 62.0 4.91e-01 100.0% 53.9%
5070153 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.71 61.0 4.88e-01 100.0% 54.8%
5052974 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 60.0 5.41e-01 94.4% 86.7%
5026156 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.71 55.0 5.24e-01 87.0% 81.5%
4982880 242.4.1.0 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain 0.70 60.0 4.20e-01 96.3% 46.5%
4930161 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.70 59.0 4.72e-01 96.3% 64.5%
4264117 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.69 58.0 4.69e-01 100.0% 53.0%
4052120 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.69 55.0 4.27e-01 88.9% 45.8%
4325854 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.68 57.0 4.57e-01 96.3% 67.3%
5007175 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.67 52.0 5.08e-01 87.0% 78.3%
4098578 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.67 56.0 4.33e-01 96.3% 70.0%
5038109 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.67 57.0 4.29e-01 100.0% 95.2%
4956984 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.67 57.0 4.69e-01 100.0% 60.0%
4354139 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.67 57.0 4.62e-01 96.3% 67.6%
5071804 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.67 57.0 4.86e-01 96.3% 76.7%
5033301 242.2.1.2 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.67 55.0 5.01e-01 94.4% 69.3%
5077865 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.67 56.0 4.35e-01 100.0% 53.1%
4949564 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.67 52.0 5.09e-01 90.7% 83.3%
3591757 4271.1.1.3 alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.66 56.0 3.69e-01 98.1% 33.5%
5068166 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.66 55.0 4.00e-01 94.4% 45.2%
5081203 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.66 52.0 3.88e-01 88.9% 36.6%
4626202 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.66 51.0 4.13e-01 87.0% 56.4%
4666956 242.4.1.0 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain 0.66 56.0 4.53e-01 96.3% 68.6%
5055051 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.66 55.0 4.50e-01 96.3% 64.8%
4979253 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.66 53.0 4.39e-01 100.0% 48.2%
4590367 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.65 55.0 4.41e-01 96.3% 64.5%
3989273 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.65 54.0 4.38e-01 100.0% 56.5%
5036184 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.64 53.0 4.45e-01 96.3% 63.0%
4938501 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.64 53.0 4.41e-01 96.3% 52.0%
3712060 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.63 48.0 3.45e-01 83.3% 67.3%
4993277 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.63 52.0 4.26e-01 96.3% 67.3%
4990256 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.63 50.0 4.44e-01 88.9% 73.8%
5078462 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.63 51.0 3.30e-01 94.4% 22.3%
4971306 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.63 51.0 4.07e-01 100.0% 48.5%
5030462 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.63 52.0 4.27e-01 96.3% 67.6%
4968640 242.4.1.0 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain 0.62 51.0 4.18e-01 96.3% 64.5%
3739335 4099.1.1.5 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Csm1 0.62 55.0 4.11e-01 100.0% 40.0%
5032006 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.62 51.0 4.20e-01 96.3% 68.6%
4941230 242.4.1.2 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.62 51.0 4.09e-01 96.3% 56.5%
5078791 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.61 51.0 4.00e-01 98.1% 58.4%
4418038 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.61 49.0 4.03e-01 100.0% 48.3%
4979545 242.4.1.0 a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain 0.61 51.0 4.17e-01 96.3% 60.0%
3811947 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.61 49.0 4.14e-01 98.1% 62.9%
5003244 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 42.0 3.26e-01 74.1% 86.4%
3685122 4099.1.1.5 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Csm1 0.60 52.0 3.91e-01 100.0% 47.4%
3592253 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.60 47.0 3.42e-01 88.9% 69.4%
5077630 2484.1.1.340 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Volactin 0.58 42.0 3.11e-01 83.3% 41.2%
3289373 3601.1.1.0 alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain 0.57 42.0 3.24e-01 85.2% 40.7%
4029355 320.4.1.3 a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.56 47.0 3.89e-01 96.3% 71.4%
5010704 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 49.0 3.65e-01 100.0% 72.1%
3595242 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.99e-01 94.4% 78.8%
3607656 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 46.0 3.95e-01 100.0% 73.7%
3709334 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 46.0 3.94e-01 100.0% 73.7%
3493204 633.23.1.3 alpha bundles › Bromodomain-like › Claudin › Claudin › L_HMGIC_fpl 0.53 42.0 2.81e-01 90.7% 64.5%
5015794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.82e-01 96.3% 80.0%
5001240 2007.1.2.5 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Bmp 0.53 39.0 2.60e-01 85.2% 19.7%
5073893 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.52e-01 88.9% 65.9%
4121234 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.52e-01 88.9% 68.2%
3998804 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 41.0 3.75e-01 94.4% 71.2%
4352407 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.94e-01 96.3% 81.4%
4375847 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.51 38.0 3.16e-01 77.8% 55.6%
5063559 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.72e-01 94.4% 84.0%
2998186 7579.1.1.13 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH 0.51 44.0 2.84e-01 100.0% 84.4%
4021723 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.50 38.0 3.33e-01 90.7% 65.3%
D2 high residues 65-155
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gx0B03 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.60 44.0 4.73e-01 93.4% 92.3%
3jxoA00 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.58 42.0 4.38e-01 94.5% 84.5%
5zceA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 35.0 3.78e-01 79.1% 75.3%
5uzgA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 45.0 4.60e-01 100.0% 90.0%
4g65A04 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.54 41.0 4.15e-01 94.5% 83.5%
7csxA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 40.0 4.37e-01 97.8% 100.0%
1wexA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 40.0 4.37e-01 97.8% 100.0%
4g65B02 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.52 40.0 4.06e-01 95.6% 82.6%
1rerA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.52 42.0 3.86e-01 91.2% 99.2%
1uokA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 33.0 3.54e-01 79.1% 75.6%
3gmgA00 3.30.70.1880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 0.51 45.0 3.94e-01 100.0% 75.5%
5lslA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 40.0 4.27e-01 100.0% 100.0%
4c97A02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 43.0 3.86e-01 98.9% 94.0%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
154618 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.60 44.0 4.49e-01 93.4% 80.0%
4186020 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.59 44.0 4.49e-01 97.8% 82.2%
4654573 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.58 45.0 4.61e-01 100.0% 86.7%
4665032 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.58 46.0 4.71e-01 100.0% 91.8%
4967001 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.58 42.0 4.36e-01 95.6% 83.5%
4949156 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.57 44.0 4.78e-01 94.5% 100.0%
4168068 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.57 43.0 4.69e-01 95.6% 100.0%
4122122 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.57 41.0 4.55e-01 94.5% 100.0%
4966995 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.57 42.0 4.24e-01 94.5% 80.0%
4981783 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.56 41.0 4.20e-01 94.5% 79.8%
3283932 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.56 41.0 4.19e-01 93.4% 78.9%
4964121 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.56 42.0 4.22e-01 95.6% 80.0%
4969956 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.56 42.0 4.38e-01 96.7% 87.1%
5055796 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.56 40.0 4.27e-01 94.5% 87.5%
4054166 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.56 45.0 4.71e-01 97.8% 98.8%
3965094 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.56 42.0 4.22e-01 94.5% 81.1%
5007603 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.56 40.0 4.21e-01 94.5% 87.5%
5021787 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.56 40.0 4.44e-01 94.5% 100.0%
4963255 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.56 40.0 4.45e-01 92.3% 100.0%
3387126 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.55 40.0 4.22e-01 94.5% 88.7%
4542176 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.55 44.0 4.36e-01 100.0% 82.0%
4985451 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.55 41.0 4.45e-01 92.3% 98.7%
4413980 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.55 40.0 4.30e-01 94.5% 96.0%
5009563 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.54 37.0 3.87e-01 94.5% 80.0%
5077057 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.54 47.0 4.50e-01 100.0% 98.2%
5042196 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.53 45.0 3.74e-01 100.0% 89.4%
4413532 304.3.1.4 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MCR_D 0.52 46.0 3.92e-01 100.0% 72.7%
5013690 304.158.1.2 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d 0.52 45.0 3.54e-01 100.0% 61.5%
1981 12.1.1.75 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › SusG_C 0.52 33.0 3.53e-01 79.1% 74.7%
3956950 304.51.1.7 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 0.51 45.0 3.96e-01 100.0% 92.1%
1277765 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.51 39.0 3.98e-01 96.7% 84.6%
5042764 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.51 45.0 4.07e-01 98.9% 90.4%
5012278 304.51.1.13 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6_I-A 0.51 45.0 4.16e-01 100.0% 96.7%
3599459 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 42.0 4.08e-01 100.0% 80.8%
3707051 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 42.0 3.14e-01 100.0% 35.0%
4955179 304.51.1.7 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 0.51 43.0 3.87e-01 95.6% 96.9%
3708799 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.50 42.0 3.88e-01 100.0% 72.2%
4309280 304.51.1.7 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 0.50 42.0 3.76e-01 95.6% 94.1%
4971630 304.51.1.7 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 0.50 43.0 3.79e-01 95.6% 93.3%
5058004 304.17.1.2 a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › Spt5-NGN 0.50 36.0 3.78e-01 98.9% 86.3%