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ON464762.1__UTV61134.1__JDFnp5_28__00028
Bact-VirON464762.1__UTV61134.1__JDFnp5_28__00028
Identity
- Accession:
- ON464762 ↗
- Kingdom:
- phage
Quality
96.4
mean pLDDT
Cluster
View cluster (41 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-123
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q8rA00 | 3.30.1330.70 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Holliday junction resolvase RusA | 0.75 | 63.0 | 6.44e-01 | 100.0% | 92.4% |
| 4nq3A01 | 3.30.1330.170 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Cyanuric acid hydrolase/Barbiturase, RU A | 0.64 | 45.0 | 4.93e-01 | 100.0% | 89.8% |
| 1vk3A02 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.61 | 42.0 | 4.09e-01 | 100.0% | 63.0% |
| 1yawB01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.60 | 43.0 | 4.18e-01 | 100.0% | 67.2% |
| 2zauA01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.59 | 41.0 | 4.07e-01 | 100.0% | 68.3% |
| 3mcqA01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.59 | 41.0 | 4.03e-01 | 100.0% | 65.7% |
| 1ygyB03 | 3.30.1330.90 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 | 0.58 | 46.0 | 4.43e-01 | 92.6% | 74.1% |
| 2rb9A01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.58 | 43.0 | 4.05e-01 | 100.0% | 63.9% |
| 1vbkA02 | 3.30.2300.10 | Alpha Beta › 2-Layer Sandwich › THUMP fold › THUMP superfamily | 0.57 | 38.0 | 4.41e-01 | 94.3% | 100.0% |
| 3d01E00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.57 | 48.0 | 4.46e-01 | 100.0% | 72.3% |
| 3kizA01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.57 | 46.0 | 4.47e-01 | 100.0% | 77.3% |
| 1dihA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 42.0 | 4.40e-01 | 98.4% | 87.0% |
| 2kdxA00 | 3.30.2320.80 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › | 0.55 | 40.0 | 4.05e-01 | 76.2% | 96.6% |
| 6aeoB01 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.54 | 46.0 | 4.45e-01 | 100.0% | 83.7% |
| 1p1jA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 38.0 | 3.91e-01 | 99.2% | 83.5% |
| 2iu4A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.51 | 46.0 | 4.30e-01 | 100.0% | 82.8% |
| 1oi2A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.51 | 45.0 | 4.17e-01 | 100.0% | 86.4% |
| 2ch5B02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 41.0 | 3.52e-01 | 88.5% | 86.5% |
| 1p9lA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.50 | 36.0 | 3.85e-01 | 96.7% | 86.9% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4156345 | 301.4.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA | 0.84 | 73.0 | 7.39e-01 | 100.0% | 92.5% |
| 5081957 | 301.4.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA | 0.77 | 72.0 | 6.70e-01 | 100.0% | 95.3% |
| 3982309 | 301.4.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA | 0.75 | 65.0 | 6.55e-01 | 100.0% | 92.5% |
| 5083025 | 301.4.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA | 0.75 | 68.0 | 6.78e-01 | 100.0% | 94.4% |
| 318712 | 301.4.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA | 0.74 | 63.0 | 6.35e-01 | 100.0% | 90.8% |
| 5032184 | 301.4.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA | 0.72 | 58.0 | 6.12e-01 | 100.0% | 94.5% |
| 4537541 | 301.4.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA | 0.71 | 62.0 | 6.25e-01 | 100.0% | 94.2% |
| 3979733 | 301.3.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like | 0.63 | 46.0 | 4.90e-01 | 100.0% | 88.6% |
| 4155276 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.62 | 40.0 | 4.64e-01 | 70.5% | 94.1% |
| 3489448 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.60 | 38.0 | 4.45e-01 | 98.4% | 91.8% |
| 4448010 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.60 | 39.0 | 4.50e-01 | 70.5% | 96.4% |
| 4210304 | 298.1.1.9 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C | 0.59 | 42.0 | 4.39e-01 | 73.0% | 84.5% |
| 4154607 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.59 | 40.0 | 4.49e-01 | 100.0% | 94.4% |
| 3276546 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.59 | 40.0 | 2.94e-01 | 70.5% | 53.1% |
| 4945507 | 301.2.1.5 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS_C | 0.58 | 42.0 | 4.03e-01 | 100.0% | 64.1% |
| None | — | 0.58 | 42.0 | 3.68e-01 | 100.0% | 48.9% | |
| None | — | 0.58 | 42.0 | 3.64e-01 | 100.0% | 47.7% | |
| 4114799 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.58 | 38.0 | 4.36e-01 | 73.8% | 97.6% |
| 5039041 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.57 | 40.0 | 4.37e-01 | 99.2% | 88.0% |
| 4097489 | 301.7.1.8 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › PF29624 | 0.57 | 41.0 | 4.08e-01 | 100.0% | 72.0% |
| 5043615 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.57 | 37.0 | 4.24e-01 | 100.0% | 95.3% |
| 4318787 | 298.1.1.9 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C | 0.57 | 40.0 | 4.17e-01 | 96.7% | 79.1% |
| 3588161 | 298.1.1.9 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C | 0.56 | 40.0 | 4.24e-01 | 73.0% | 84.8% |
| 5015696 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.56 | 40.0 | 4.28e-01 | 100.0% | 87.6% |
| 4108436 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.56 | 38.0 | 4.32e-01 | 99.2% | 98.8% |
| 4466922 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.56 | 40.0 | 4.33e-01 | 100.0% | 92.0% |
| 4260262 | 298.1.1.9 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C | 0.56 | 40.0 | 4.28e-01 | 75.4% | 88.6% |
| 4999237 | 301.2.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like | 0.54 | 42.0 | 3.46e-01 | 100.0% | 45.3% |
| 3998381 | 2004.1.1.432 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, Rad17 | 0.53 | 40.0 | 3.27e-01 | 80.3% | 95.9% |
| 4932724 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.53 | 36.0 | 4.12e-01 | 76.2% | 100.0% |
| 4999242 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.52 | 45.0 | 3.97e-01 | 100.0% | 63.2% |
| 4200670 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.52 | 36.0 | 4.02e-01 | 76.2% | 98.9% |
| 3595048 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 40.0 | 3.18e-01 | 86.1% | 78.1% |
| 3866884 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.50 | 42.0 | 3.14e-01 | 90.2% | 83.3% |
| 4943332 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.50 | 37.0 | 3.98e-01 | 77.0% | 95.0% |
| 3287361 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.50 | 36.0 | 3.94e-01 | 88.5% | 96.8% |