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ON464764.1__UTV61325.1__JDFnp4_147__00147

Bact-Vir

ON464764.1__UTV61325.1__JDFnp4_147__00147

Identity

Accession:
ON464764 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-55
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.84 68.0 6.76e-01 92.7% 84.2%
3wfwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.79 68.0 5.02e-01 94.5% 39.9%
6vmsR00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.78 61.0 3.79e-01 83.6% 16.9%
7utzR02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.76 56.0 3.55e-01 81.8% 16.1%
2wdqC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.76 55.0 4.25e-01 80.0% 35.5%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.75 67.0 4.89e-01 98.2% 41.1%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.73 56.0 5.79e-01 83.6% 88.5%
2efeA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.73 60.0 5.29e-01 92.7% 71.6%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.72 56.0 5.73e-01 90.9% 86.8%
2lqxA00 6.10.250.1700 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.72 49.0 5.39e-01 87.3% 97.6%
1t07A00 1.10.3880.10 Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX 0.70 52.0 4.58e-01 80.0% 84.0%
2fiwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.69 50.0 3.67e-01 89.1% 27.5%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.67 41.0 4.42e-01 83.6% 70.8%
4i43B02 3.30.43.40 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain 0.67 55.0 4.38e-01 92.7% 44.7%
6i2mB02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.66 54.0 4.30e-01 96.4% 77.9%
1pieA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.65 54.0 3.63e-01 92.7% 40.8%
5jnmA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.65 51.0 3.73e-01 92.7% 29.9%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 46.0 4.50e-01 78.2% 70.0%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.64 54.0 3.65e-01 94.5% 40.7%
4a64A02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.64 53.0 4.27e-01 96.4% 75.2%
2blfB01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.63 45.0 4.35e-01 81.8% 66.7%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.63 45.0 4.27e-01 80.0% 62.7%
2jaeA03 1.20.1440.240 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.63 51.0 4.20e-01 90.9% 55.4%
1l1lA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.62 51.0 2.96e-01 90.9% 56.4%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.62 44.0 3.90e-01 78.2% 51.2%
3u9rB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.61 47.0 3.13e-01 89.1% 29.3%
3bemB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.61 47.0 3.21e-01 87.3% 39.7%
2jqtA00 1.20.1280.40 Mainly Alpha › Up-down Bundle › Monooxygenase › HHA 0.61 43.0 4.32e-01 98.2% 73.7%
6pw7A02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.61 44.0 4.12e-01 94.5% 60.6%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.61 49.0 3.76e-01 92.7% 48.2%
6ofuA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 48.0 3.25e-01 98.2% 25.5%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 49.0 4.51e-01 92.7% 79.5%
3fixA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 49.0 3.50e-01 92.7% 37.0%
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.59 44.0 4.37e-01 83.6% 80.0%
3g36B00 1.20.890.10 Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain 0.58 41.0 4.22e-01 78.2% 82.4%
4uqfG01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.58 39.0 4.03e-01 80.0% 78.8%
3byiD00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.57 48.0 3.33e-01 98.2% 79.9%
7wboA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 50.0 3.52e-01 100.0% 51.1%
4in3B00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 48.0 2.76e-01 100.0% 31.2%
3fxdC00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.57 44.0 4.61e-01 89.1% 100.0%
2id3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 46.0 3.47e-01 90.9% 45.1%
4gf0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 43.0 3.51e-01 87.3% 76.1%
2euiA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 45.0 3.38e-01 92.7% 47.1%
1d4aA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.55 42.0 2.76e-01 85.5% 78.4%
2v8pA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.54 41.0 3.17e-01 92.7% 59.4%
1a8rA01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.54 42.0 3.89e-01 100.0% 74.1%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5044454 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.84 60.0 4.42e-01 85.5% 31.5%
5069130 6026.1.1.0 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.80 59.0 6.15e-01 81.8% 86.0%
5065174 627.1.1.0 alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain 0.78 57.0 5.71e-01 80.0% 78.2%
3182801 592.2.1.2 alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.76 53.0 3.96e-01 72.7% 84.6%
3214018 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.76 63.0 5.20e-01 90.9% 58.9%
3504161 109.4.1.17 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin 0.72 62.0 4.00e-01 94.5% 22.1%
3941077 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.71 59.0 4.39e-01 92.7% 44.3%
4239 5069.1.3.1 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.71 57.0 4.37e-01 90.9% 55.8%
4214084 507.1.1.1 alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB 0.69 59.0 3.50e-01 98.2% 72.4%
3415522 4082.1.1.1 alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange 0.69 55.0 5.24e-01 92.7% 75.4%
3690556 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.68 53.0 5.20e-01 85.5% 88.3%
3178356 109.4.1.17 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin 0.68 55.0 3.38e-01 94.5% 20.0%
4976411 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.67 56.0 3.28e-01 98.2% 19.8%
3180584 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.67 53.0 4.54e-01 87.3% 60.0%
3781140 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 47.0 3.79e-01 87.3% 40.0%
4075542 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.65 51.0 4.00e-01 89.1% 52.8%
3927398 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.64 48.0 4.00e-01 83.6% 43.8%
4543805 230.3.1.1 a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.64 49.0 3.79e-01 85.5% 38.8%
157374 107.1.1.0 alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c 0.63 45.0 4.01e-01 81.8% 51.9%
4093066 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.63 54.0 4.84e-01 98.2% 71.2%
5027571 2486.1.1.3 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.63 47.0 2.75e-01 83.6% 13.7%
3316706 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 50.0 4.12e-01 87.3% 59.0%
4523828 101.26.1.2 alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 0.63 50.0 3.81e-01 90.9% 44.3%
3929614 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.62 52.0 4.58e-01 100.0% 77.8%
5064355 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.62 49.0 4.29e-01 90.9% 74.4%
3973793 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.62 54.0 3.21e-01 98.2% 24.1%
4937420 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.62 50.0 2.96e-01 98.2% 29.5%
3531403 3914.1.1.0 alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain 0.61 45.0 4.65e-01 90.9% 88.0%
4562263 3435.1.1.1 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.61 48.0 2.98e-01 85.5% 24.7%
4331897 235.1.1.41 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › TraH_2 0.60 46.0 3.40e-01 83.6% 50.0%
4886009 3435.1.1.1 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.60 47.0 3.07e-01 92.7% 38.7%
3360739 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 44.0 4.01e-01 83.6% 73.8%
3327321 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.60 51.0 4.39e-01 96.4% 83.3%
3963537 3435.1.1.1 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.59 48.0 2.99e-01 89.1% 25.4%
4385509 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.58 49.0 4.35e-01 100.0% 68.2%
3600909 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 47.0 3.25e-01 100.0% 88.6%
3992872 192.17.1.17 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › Got1 0.54 42.0 4.10e-01 94.5% 87.7%
D2 medium residues 56-147
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.64 42.0 4.15e-01 93.5% 63.5%
3waiA02 2.60.40.3390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 41.0 4.11e-01 100.0% 71.0%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 36.0 3.98e-01 97.8% 92.5%
4hscX04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.53 42.0 4.00e-01 98.9% 71.8%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.53 33.0 3.28e-01 97.8% 57.4%
2o8rB02 3.30.1840.10 Alpha Beta › 2-Layer Sandwich › polyphosphate kinase like › Polyphosphate kinase middle domain 0.52 45.0 3.78e-01 96.7% 56.8%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.52 38.0 3.51e-01 77.2% 95.0%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.52 36.0 2.53e-01 100.0% 22.0%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.51 40.0 3.80e-01 100.0% 69.4%
5jgfA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.50 42.0 3.65e-01 93.5% 77.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2772521 11.14.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 › AglB_L1 0.60 42.0 4.16e-01 100.0% 69.5%
3882782 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.58 45.0 4.08e-01 94.6% 60.8%
3256773 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 33.0 2.76e-01 93.5% 34.4%
3390499 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.55 46.0 4.03e-01 93.5% 61.4%
4648475 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.52 32.0 3.67e-01 91.3% 93.3%
3607782 75.1.1.1 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase 0.52 44.0 3.31e-01 94.6% 96.6%
3874464 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.52 34.0 2.32e-01 90.2% 17.5%
4281587 11.1.1.913 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29899 0.51 44.0 3.53e-01 100.0% 62.5%