←Back to structures
ON470583.1__URC08872.1__X__00002
Bact-VirON470583.1__URC08872.1__X__00002
Identity
- Accession:
- ON470583 ↗
- Kingdom:
- phage
Quality
85.4
mean pLDDT
Taxonomy
TaxID: 2946115
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 159-250
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06167.19 best | Peptidase_M90 | 64.5 | 1.60e-17 | 92.4% | 32.9% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3khiA02 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 1.00 | 98.0 | 8.92e-01 | 100.0% | 81.4% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.65 | 45.0 | 4.04e-01 | 70.7% | 61.6% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 43.0 | 4.56e-01 | 90.2% | 82.3% |
| 2hroA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.61 | 43.0 | 3.89e-01 | 73.9% | 83.6% |
| 5cqgA03 | 1.10.10.2210 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 33.0 | 3.60e-01 | 82.6% | 62.0% |
| 2hfiA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.60 | 41.0 | 3.77e-01 | 70.7% | 79.7% |
| 4zqeA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 37.0 | 3.66e-01 | 88.0% | 58.3% |
| 2w02B06 | 1.10.340.60 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › AcsD, palm domain, helix bundle | 0.59 | 37.0 | 3.72e-01 | 83.7% | 63.0% |
| 2q8kA01 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.55 | 38.0 | 2.69e-01 | 91.3% | 22.1% |
| 1sj7C00 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.55 | 41.0 | 3.40e-01 | 78.3% | 95.8% |
| 2e9fB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.53 | 38.0 | 3.83e-01 | 90.2% | 72.9% |
| 4ghjB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.53 | 38.0 | 4.05e-01 | 93.5% | 92.1% |
| 7r97A01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.51 | 40.0 | 3.45e-01 | 83.7% | 56.8% |
| 3tl4X02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.51 | 29.0 | 3.23e-01 | 77.2% | 69.4% |
| 3aekA03 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.51 | 33.0 | 3.08e-01 | 82.6% | 49.6% |
| 1f1mA00 | 1.20.120.240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 | 0.50 | 41.0 | 3.50e-01 | 92.4% | 77.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4624311 | 2498.1.1.31 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M90 | 0.91 | 82.0 | 5.73e-01 | 94.6% | 34.4% |
| 3972588 | 2498.1.1.31 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M90 | 0.90 | 86.0 | 6.06e-01 | 100.0% | 38.0% |
| 3579767 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.61 | 37.0 | 3.52e-01 | 82.6% | 51.8% |
| 3218923 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.58 | 45.0 | 4.60e-01 | 83.7% | 97.8% |
| 3961347 | 150.5.1.53 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PPE | 0.58 | 36.0 | 3.74e-01 | 79.3% | 67.1% |
| 5066182 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.57 | 46.0 | 3.58e-01 | 87.0% | 76.0% |
| 4336179 | 3322.1.1.1 ↗ | alpha bundles › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › FAS_N | 0.56 | 50.0 | 4.45e-01 | 97.8% | 98.5% |
| 3236718 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.56 | 44.0 | 3.33e-01 | 83.7% | 76.1% |
| 5051429 | 2002.3.1.3 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_57 | 0.54 | 46.0 | 2.96e-01 | 91.3% | 79.5% |
| 4009351 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.54 | 41.0 | 3.32e-01 | 82.6% | 56.6% |
| 4391309 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.53 | 40.0 | 3.61e-01 | 80.4% | 67.7% |
| 4268455 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 3.79e-01 | 88.0% | 77.6% |
| 3720879 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.52 | 39.0 | 2.91e-01 | 81.5% | 66.0% |
| 4423574 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.51 | 43.0 | 3.27e-01 | 91.3% | 47.8% |
| 4011138 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 44.0 | 2.82e-01 | 100.0% | 71.3% |
D2
medium
residues 23-158
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06167.19 best | Peptidase_M90 | 124.4 | 8.00e-36 | 100.0% | 56.0% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dl1A01 | 1.10.472.150 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Glucose-regulated metallo-peptidase M90, N-terminal domain | 1.00 | 66.0 | 7.90e-01 | 86.0% | 92.9% |
| 4l7aA00 | 3.40.390.70 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › | 0.62 | 51.0 | 4.07e-01 | 86.8% | 48.3% |
| 4wz9A02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.59 | 47.0 | 3.78e-01 | 83.1% | 82.7% |
| 2qw5A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.52 | 40.0 | 3.05e-01 | 80.1% | 97.6% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4285966 | 2498.1.1.31 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M90 | 0.98 | 96.0 | 7.57e-01 | 100.0% | 55.5% |
| 3972588 | 2498.1.1.31 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M90 | 0.92 | 89.0 | 7.06e-01 | 100.0% | 56.3% |
| 4624311 | 2498.1.1.31 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M90 | 0.89 | 85.0 | 6.73e-01 | 100.0% | 56.4% |
| 3714462 | 2498.1.1.36 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › WLM | 0.67 | 47.0 | 4.61e-01 | 83.1% | 66.9% |
| 3782282 | 2498.1.1.36 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › WLM | 0.66 | 46.0 | 4.62e-01 | 82.4% | 69.3% |
| 3783663 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 30.0 | 3.60e-01 | 72.8% | 82.2% |
| 3923643 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.50 | 36.0 | 3.87e-01 | 86.0% | 87.0% |