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ON470584.1__URC08960.1__X__00028

Bact-Vir

ON470584.1__URC08960.1__X__00028

Identity

Accession:
ON470584 ↗
Kingdom:
phage

Quality

74.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-86
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.77 64.0 6.11e-01 97.6% 77.4%
3mcaA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.77 53.0 4.88e-01 70.7% 77.5%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.73 64.0 5.29e-01 97.6% 64.6%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.73 62.0 4.87e-01 92.7% 51.2%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.73 65.0 5.68e-01 100.0% 76.6%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 60.0 4.47e-01 95.1% 67.2%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.69 58.0 5.34e-01 95.1% 99.1%
2xrcC04 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 54.0 4.19e-01 95.1% 39.3%
1fiwA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 58.0 5.11e-01 95.1% 80.0%
6zlvA01 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.67 57.0 5.91e-01 95.1% 100.0%
2xxlA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 57.0 4.94e-01 95.1% 78.5%
1ntpA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 57.0 5.31e-01 95.1% 78.6%
3tvjB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 57.0 5.23e-01 95.1% 77.6%
2f91A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 56.0 5.11e-01 96.3% 80.5%
6r2wH02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 56.0 5.10e-01 95.1% 77.3%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 56.0 5.42e-01 95.1% 84.9%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 44.0 4.18e-01 96.3% 60.4%
5fcrC02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 56.0 5.12e-01 96.3% 79.4%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.64 55.0 5.38e-01 96.3% 87.9%
1t2pA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.64 57.0 4.75e-01 100.0% 94.5%
5k9aA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.63 56.0 4.16e-01 98.8% 60.9%
2w1jA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.63 57.0 4.31e-01 100.0% 72.3%
2ln7A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.63 56.0 4.66e-01 100.0% 88.4%
1xn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 36.0 3.04e-01 100.0% 32.6%
2kw8A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.63 55.0 4.48e-01 97.6% 92.4%
2aiqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 55.0 4.93e-01 96.3% 70.8%
4d70A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.63 56.0 4.50e-01 100.0% 95.0%
3fn5B00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.63 56.0 4.50e-01 100.0% 81.0%
4ux7A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.62 54.0 4.10e-01 100.0% 83.3%
6ruiB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.60 44.0 3.86e-01 78.0% 92.1%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 42.0 4.07e-01 75.6% 64.9%
1jeyA02 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.59 50.0 4.45e-01 98.8% 96.0%
3f1sB03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 50.0 4.48e-01 95.1% 73.9%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 47.0 4.58e-01 96.3% 94.7%
5cenA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 41.0 4.21e-01 97.6% 87.2%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 36.0 2.90e-01 100.0% 33.3%
4kktA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.54 37.0 3.56e-01 86.6% 61.5%
3mdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 44.0 4.03e-01 97.6% 70.9%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.51 38.0 3.38e-01 79.3% 95.8%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 35.0 2.56e-01 72.0% 95.5%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 37.0 2.73e-01 79.3% 96.2%
3dxpA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 43.0 4.18e-01 98.8% 100.0%
2qycA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 36.0 3.37e-01 75.6% 75.5%
1gkaB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 37.0 2.98e-01 80.5% 66.7%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942928 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.91 87.0 8.60e-01 100.0% 96.5%
4982501 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.77 56.0 5.35e-01 85.4% 66.3%
4981269 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.76 59.0 5.61e-01 86.6% 70.5%
3963092 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.75 64.0 6.10e-01 98.8% 77.9%
4883586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 50.0 4.99e-01 85.4% 66.3%
4072878 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 54.0 5.47e-01 89.0% 77.5%
4214150 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.72 61.0 5.57e-01 98.8% 70.0%
5066224 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.72 40.0 3.87e-01 89.0% 50.0%
4954552 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 61.0 4.92e-01 95.1% 95.6%
4463780 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.71 63.0 5.73e-01 98.8% 79.1%
3587074 1.1.13.17 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.70 59.0 5.40e-01 93.9% 98.2%
1117606 1.1.13.17 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.70 59.0 5.09e-01 95.1% 99.3%
3970225 1.1.13.68 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27125 0.69 64.0 6.18e-01 100.0% 98.9%
5078127 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.69 48.0 4.80e-01 72.0% 96.5%
5035840 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 55.0 4.81e-01 85.4% 75.8%
3968432 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 63.0 5.79e-01 100.0% 78.1%
3289340 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 54.0 5.48e-01 85.4% 85.0%
5004559 1.1.13.75 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube 0.69 57.0 4.83e-01 91.5% 100.0%
4083333 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 52.0 4.99e-01 90.2% 70.5%
4957560 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 57.0 4.99e-01 96.3% 98.5%
4318415 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.68 58.0 5.52e-01 97.6% 81.1%
4251394 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.68 59.0 4.10e-01 96.3% 32.8%
5047619 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 56.0 4.80e-01 90.2% 74.6%
5007084 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.67 55.0 5.09e-01 90.2% 74.3%
5007131 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.67 52.0 5.00e-01 87.8% 72.6%
4970796 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 52.0 4.91e-01 85.4% 74.0%
5040464 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 51.0 4.91e-01 87.8% 72.6%
3907690 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.66 57.0 4.21e-01 98.8% 37.1%
5053822 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 53.0 4.52e-01 87.8% 75.4%
3611892 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.65 55.0 4.24e-01 98.8% 41.1%
4934423 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 52.0 4.68e-01 86.6% 76.4%
5053561 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 52.0 5.05e-01 87.8% 85.6%
5028172 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 53.0 4.64e-01 90.2% 76.7%
3163913 1.1.5.16 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.63 55.0 3.97e-01 97.6% 33.3%
3966468 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 52.0 4.93e-01 87.8% 76.8%
1842342 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.63 56.0 4.16e-01 98.8% 60.9%
4586448 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.63 57.0 4.41e-01 100.0% 72.5%
2034294 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.63 56.0 4.39e-01 100.0% 80.6%
428579 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.63 56.0 4.77e-01 100.0% 90.5%
3589952 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.63 56.0 4.35e-01 100.0% 74.1%
1566317 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.63 56.0 4.50e-01 100.0% 95.0%
5003338 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 49.0 4.50e-01 84.1% 73.3%
4033467 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.63 56.0 4.36e-01 100.0% 76.1%
3587540 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.62 56.0 4.48e-01 100.0% 87.1%
2832652 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.62 56.0 4.26e-01 100.0% 69.3%
3397229 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.62 54.0 3.98e-01 98.8% 35.2%
5024134 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.62 56.0 4.67e-01 100.0% 90.7%
3610296 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.59 42.0 3.83e-01 74.4% 95.5%
3933891 1.1.1.8 beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.58 50.0 4.50e-01 97.6% 80.9%
4172447 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 42.0 4.36e-01 85.4% 84.0%
4538466 3197.1.1.1 a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N 0.54 38.0 3.28e-01 73.2% 86.9%
5076433 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.53 41.0 3.41e-01 85.4% 79.1%
3227515 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 29.0 2.51e-01 89.0% 34.9%
4020358 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.13e-01 86.6% 95.0%
D2 high residues 126-166
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3i5pA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.69 49.0 4.19e-01 90.2% 45.7%
3tw8A03 6.10.140.1000 Special › Helix non-globular › Helix Hairpins › 0.67 48.0 4.82e-01 90.2% 82.9%
2ozvA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 49.0 3.14e-01 90.2% 20.7%
1br2A04 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 43.0 2.92e-01 100.0% 92.8%
3abiA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 38.0 2.61e-01 82.9% 47.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3490387 101.1.10.12 alpha arrays › HTH › HTH › Cyclin-like › Spy1 0.70 48.0 3.32e-01 75.6% 21.0%
4573348 4044.1.1.0 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.66 51.0 4.42e-01 85.4% 70.8%
3623282 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.64 44.0 2.69e-01 97.6% 10.3%
4183514 2004.1.1.412 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AddB_5th 0.54 45.0 2.61e-01 100.0% 9.9%