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ON470584.1__URC08993.1__X__00061
Bact-VirON470584.1__URC08993.1__X__00061
Identity
- Accession:
- ON470584 ↗
- Kingdom:
- phage
Quality
87.1
mean pLDDT
Taxonomy
TaxID: 2946090
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 36-96_199-209
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00849.28 best | PseudoU_synth_2 | 35.1 | 2.10e-08 | 93.1% | 43.4% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2omlA01 | 3.30.70.580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, N-terminal subdomain | 0.97 | 88.0 | 8.77e-01 | 100.0% | 91.9% |
| 4labA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.90 | 84.0 | 6.02e-01 | 100.0% | 87.2% |
| 1kskA02 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.88 | 79.0 | 5.87e-01 | 95.8% | 94.0% |
| 1vioA02 | 3.30.70.580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, N-terminal subdomain | 0.88 | 83.0 | 7.57e-01 | 100.0% | 84.4% |
| 3dh3A02 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.88 | 82.0 | 5.92e-01 | 100.0% | 85.6% |
| 2gmlA01 | 3.30.70.580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, N-terminal subdomain | 0.84 | 77.0 | 6.85e-01 | 100.0% | 81.0% |
| 2i82B00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.76 | 65.0 | 4.56e-01 | 93.1% | 91.6% |
| 1przA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.73 | 61.0 | 4.43e-01 | 91.7% | 95.4% |
| 1v9kA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.70 | 58.0 | 4.12e-01 | 93.1% | 89.9% |
| 1z2zA02 | 3.30.70.3160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 48.0 | 4.49e-01 | 100.0% | 74.4% |
| 2rvjA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 45.0 | 4.10e-01 | 100.0% | 78.6% |
| 4if8B01 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.51 | 40.0 | 2.79e-01 | 88.9% | 41.8% |
| 1tdjA03 | 3.40.1020.10 | Alpha Beta › 3-Layer(aba) Sandwich › Biosynthetic Threonine Deaminase; domain 3 › Biosynthetic Threonine Deaminase; Domain 3 | 0.50 | 38.0 | 3.03e-01 | 84.7% | 52.2% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3969449 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 1.00 | 97.0 | 6.82e-01 | 100.0% | 94.0% |
| 4641347 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 1.00 | 97.0 | 6.64e-01 | 100.0% | 85.7% |
| 4112582 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.99 | 96.0 | 6.70e-01 | 100.0% | 92.0% |
| 3956348 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.94 | 89.0 | 6.33e-01 | 100.0% | 89.1% |
| 4226057 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.93 | 89.0 | 6.37e-01 | 100.0% | 88.3% |
| 3270417 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.93 | 88.0 | 6.30e-01 | 100.0% | 90.3% |
| 3839936 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.92 | 87.0 | 6.17e-01 | 100.0% | 91.1% |
| 3591453 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.92 | 87.0 | 6.24e-01 | 100.0% | 90.0% |
| 3262859 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.92 | 86.0 | 6.16e-01 | 100.0% | 88.6% |
| 4025427 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.91 | 85.0 | 5.81e-01 | 100.0% | 91.6% |
| 4024677 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.91 | 86.0 | 5.82e-01 | 100.0% | 79.9% |
| 3387341 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.91 | 85.0 | 6.01e-01 | 100.0% | 87.4% |
| 3164476 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.91 | 85.0 | 5.85e-01 | 100.0% | 75.8% |
| 4145503 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.91 | 85.0 | 6.08e-01 | 100.0% | 88.1% |
| 3965814 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.90 | 85.0 | 6.13e-01 | 100.0% | 95.6% |
| 4386519 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.90 | 84.0 | 6.05e-01 | 100.0% | 89.2% |
| 4473668 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.89 | 83.0 | 6.13e-01 | 100.0% | 93.5% |
| 4615864 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.88 | 82.0 | 5.94e-01 | 100.0% | 86.1% |
| 3835994 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.87 | 81.0 | 5.77e-01 | 100.0% | 92.1% |
| 4025731 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.82 | 75.0 | 5.38e-01 | 100.0% | 87.9% |
| 3719123 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.81 | 67.0 | 4.19e-01 | 88.9% | 90.9% |
| 3385464 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.80 | 68.0 | 4.67e-01 | 91.7% | 90.2% |
| 3838529 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.79 | 68.0 | 4.64e-01 | 93.1% | 87.0% |
| 3973724 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.79 | 73.0 | 5.31e-01 | 100.0% | 91.7% |
| 4574643 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.78 | 67.0 | 4.66e-01 | 91.7% | 91.6% |
| 3963974 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.78 | 68.0 | 4.58e-01 | 93.1% | 84.2% |
| 3960722 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.78 | 68.0 | 4.61e-01 | 93.1% | 84.5% |
| 3970185 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.77 | 67.0 | 4.65e-01 | 93.1% | 92.6% |
| 3587449 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.77 | 63.0 | 4.37e-01 | 88.9% | 86.5% |
| 3615101 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.77 | 66.0 | 4.18e-01 | 93.1% | 86.8% |
| 3274100 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.77 | 65.0 | 4.49e-01 | 93.1% | 88.2% |
| 4049263 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.76 | 65.0 | 4.60e-01 | 93.1% | 83.3% |
| 4024420 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.76 | 62.0 | 4.24e-01 | 88.9% | 82.0% |
| 4245082 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.75 | 65.0 | 4.46e-01 | 93.1% | 88.7% |
| 3601865 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.75 | 64.0 | 4.40e-01 | 93.1% | 93.8% |
| 4093842 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.75 | 64.0 | 4.37e-01 | 93.1% | 89.4% |
| 3288095 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.75 | 64.0 | 4.32e-01 | 91.7% | 85.3% |
| 3274134 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.74 | 63.0 | 4.29e-01 | 93.1% | 81.8% |
| 1155471 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.74 | 57.0 | 5.90e-01 | 83.3% | 86.6% |
| 3736056 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.74 | 62.0 | 4.11e-01 | 93.1% | 81.4% |
| 3506829 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.73 | 63.0 | 4.16e-01 | 93.1% | 83.9% |
| 3808723 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.73 | 62.0 | 4.14e-01 | 93.1% | 91.4% |
| 3177295 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.73 | 61.0 | 4.10e-01 | 93.1% | 92.5% |
| 5058386 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.73 | 67.0 | 4.84e-01 | 100.0% | 95.3% |
| 3798375 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.73 | 63.0 | 4.14e-01 | 94.4% | 82.8% |
| 3595232 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.72 | 61.0 | 3.89e-01 | 93.1% | 88.2% |
| 4389598 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.72 | 65.0 | 4.49e-01 | 100.0% | 95.3% |
| 5016214 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.72 | 60.0 | 4.26e-01 | 93.1% | 89.1% |
| 2067545 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.71 | 61.0 | 4.14e-01 | 93.1% | 80.0% |
| 3568614 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.71 | 60.0 | 3.96e-01 | 93.1% | 85.2% |
| 4299512 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.71 | 64.0 | 4.33e-01 | 100.0% | 96.5% |
| 4246284 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.71 | 64.0 | 4.47e-01 | 100.0% | 94.7% |
| 4255072 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.71 | 65.0 | 4.65e-01 | 100.0% | 99.0% |
| 3465961 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.70 | 63.0 | 4.40e-01 | 98.6% | 88.1% |
| 3599987 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.67 | 57.0 | 3.89e-01 | 93.1% | 83.1% |
| 4945983 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.51 | 40.0 | 3.29e-01 | 84.7% | 96.9% |
D2
high
residues 102-197
Domain cluster:
rep: CAKLQF020000030.1__CAH1093946.1__SAMEA5780031_03796__00040__D131-206