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ON470584.1__URC08996.1__X__00064
Bact-VirON470584.1__URC08996.1__X__00064
Identity
- Accession:
- ON470584 ↗
- Kingdom:
- phage
Quality
94.5
mean pLDDT
Taxonomy
TaxID: 2946090
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-100_179-210
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04356.18 best | DUF489 | 99.7 | 3.30e-28 | 72.0% | 47.6% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sdiA00 | 1.10.3890.10 | Mainly Alpha › Orthogonal Bundle › YcfC-like › HflD-like | 0.99 | 97.0 | 7.91e-01 | 100.0% | 98.6% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.56 | 32.0 | 3.56e-01 | 95.5% | 69.4% |
| 4s3mB02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 30.0 | 3.38e-01 | 86.4% | 66.0% |
| 2mabA00 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.55 | 31.0 | 3.43e-01 | 95.5% | 67.0% |
| 5cmyA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 38.0 | 3.75e-01 | 74.2% | 100.0% |
| 4didB01 | 1.20.58.450 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog | 0.53 | 39.0 | 4.15e-01 | 75.8% | 91.2% |
| 1u7gA00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.52 | 43.0 | 3.16e-01 | 90.2% | 73.9% |
| 3egoA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.52 | 31.0 | 3.22e-01 | 97.0% | 62.8% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.52 | 27.0 | 3.27e-01 | 83.3% | 75.9% |
| 6srbA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 34.0 | 3.66e-01 | 78.8% | 80.7% |
| 3q1xA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.51 | 34.0 | 3.42e-01 | 78.0% | 65.5% |
| 1gnlA01 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.50 | 40.0 | 3.97e-01 | 84.8% | 96.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3452 | 578.1.1.1 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like › DUF489 | 0.99 | 97.0 | 7.91e-01 | 100.0% | 98.6% |
| 52429 | 578.1.1.0 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like | 0.98 | 96.0 | 7.87e-01 | 100.0% | 98.6% |
| 4632175 | 578.1.1.1 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like › DUF489 | 0.96 | 93.0 | 7.63e-01 | 98.5% | 100.0% |
| 4582809 | 578.1.1.1 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like › DUF489 | 0.92 | 88.0 | 7.25e-01 | 98.5% | 98.6% |
| 4059064 | 578.1.1.1 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like › DUF489 | 0.90 | 85.0 | 7.13e-01 | 97.7% | 99.5% |
| 4349874 | 578.1.1.1 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like › DUF489 | 0.90 | 85.0 | 7.07e-01 | 97.7% | 99.5% |
| 3495625 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.54 | 39.0 | 3.29e-01 | 75.8% | 78.3% |
| 3428929 | 101.1.1.138 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD | 0.54 | 34.0 | 3.78e-01 | 100.0% | 82.0% |
| 4986820 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.53 | 47.0 | 3.72e-01 | 100.0% | 90.1% |
| 4933774 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.52 | 40.0 | 3.29e-01 | 85.6% | 44.6% |
| 3829132 | 604.3.1.35 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF6857 | 0.50 | 40.0 | 3.89e-01 | 95.5% | 76.6% |
D2
medium
residues 101-178
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04356.18 best | DUF489 | 97.8 | 1.20e-27 | 100.0% | 39.8% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sdiA00 | 1.10.3890.10 | Mainly Alpha › Orthogonal Bundle › YcfC-like › HflD-like | 0.99 | 96.0 | 6.63e-01 | 100.0% | 36.6% |
| 2ebiA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 44.0 | 4.75e-01 | 98.7% | 83.3% |
| 3lomA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.62 | 44.0 | 3.00e-01 | 74.4% | 51.4% |
| 2katA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 36.0 | 3.20e-01 | 87.2% | 40.9% |
| 7cosB02 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.59 | 36.0 | 3.67e-01 | 100.0% | 61.0% |
| 4nqfA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.59 | 49.0 | 4.18e-01 | 100.0% | 86.9% |
| 1w9rA00 | 1.20.58.440 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › choline binding protein A | 0.58 | 44.0 | 3.83e-01 | 80.8% | 71.4% |
| 4iv6B01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.58 | 46.0 | 4.01e-01 | 85.9% | 100.0% |
| 2bduA02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.57 | 43.0 | 4.41e-01 | 100.0% | 85.1% |
| 1z23A00 | 1.20.120.830 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine-rich domain | 0.56 | 48.0 | 3.89e-01 | 100.0% | 87.1% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.55 | 44.0 | 3.96e-01 | 87.2% | 90.7% |
| 1yt3A03 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.55 | 40.0 | 3.99e-01 | 83.3% | 74.4% |
| 1ka1A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.54 | 46.0 | 3.45e-01 | 100.0% | 74.0% |
| 2cgeA03 | 1.20.120.790 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Heat shock protein 90, C-terminal domain | 0.54 | 41.0 | 3.37e-01 | 83.3% | 94.1% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.51 | 43.0 | 4.18e-01 | 98.7% | 81.8% |
| 2jx0A00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.50 | 43.0 | 3.74e-01 | 100.0% | 86.3% |
| 4jndA01 | 1.10.1740.220 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.50 | 43.0 | 3.71e-01 | 98.7% | 86.2% |
| 1ashA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 40.0 | 3.35e-01 | 100.0% | 48.3% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 52429 | 578.1.1.0 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like | 1.00 | 97.0 | 6.71e-01 | 100.0% | 36.6% |
| 3452 | 578.1.1.1 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like › DUF489 | 0.99 | 96.0 | 6.63e-01 | 100.0% | 36.6% |
| 4059064 | 578.1.1.1 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like › DUF489 | 0.99 | 95.0 | 6.67e-01 | 100.0% | 38.0% |
| 4349874 | 578.1.1.1 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like › DUF489 | 0.97 | 93.0 | 6.48e-01 | 100.0% | 37.8% |
| 4582809 | 578.1.1.1 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like › DUF489 | 0.96 | 92.0 | 6.44e-01 | 100.0% | 37.1% |
| 4566534 | 578.1.1.1 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like › DUF489 | 0.95 | 91.0 | 6.37e-01 | 100.0% | 37.1% |
| 4505785 | 578.1.1.1 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like › DUF489 | 0.95 | 91.0 | 6.38e-01 | 100.0% | 38.0% |
| 4086752 | 578.1.1.1 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like › DUF489 | 0.94 | 89.0 | 6.29e-01 | 100.0% | 37.9% |
| 4285178 | 578.1.1.1 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like › DUF489 | 0.94 | 90.0 | 6.33e-01 | 100.0% | 38.0% |
| 4434880 | 578.1.1.1 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like › DUF489 | 0.92 | 87.0 | 5.98e-01 | 100.0% | 34.8% |
| 4632175 | 578.1.1.1 ↗ | alpha arrays › YcfC-like › YcfC-like › YcfC-like › DUF489 | 0.91 | 86.0 | 6.06e-01 | 100.0% | 37.1% |
| 3591582 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 51.0 | 3.95e-01 | 78.2% | 88.2% |
| 3504805 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.66 | 48.0 | 4.01e-01 | 100.0% | 43.6% |
| 143030 | 109.10.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin | 0.65 | 47.0 | 3.46e-01 | 78.2% | 62.4% |
| 3379189 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.62 | 41.0 | 3.38e-01 | 100.0% | 37.9% |
| 3440522 | 5069.1.3.12 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF6490 | 0.62 | 48.0 | 4.48e-01 | 82.1% | 96.8% |
| 3886005 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.57 | 51.0 | 4.49e-01 | 100.0% | 90.4% |
| 3913373 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.57 | 51.0 | 4.42e-01 | 100.0% | 86.7% |
| 3182290 | 174.1.1.4 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4267 | 0.55 | 45.0 | 3.82e-01 | 89.7% | 73.1% |
| 3374304 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.55 | 43.0 | 4.36e-01 | 85.9% | 90.0% |
| 3673117 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.54 | 45.0 | 3.67e-01 | 93.6% | 87.3% |
| 3218245 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.54 | 45.0 | 3.40e-01 | 92.3% | 70.8% |
| 3203042 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.52 | 44.0 | 3.51e-01 | 93.6% | 77.5% |
| 3694240 | 3924.1.1.1 ↗ | alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Fungal_trans_2 | 0.52 | 39.0 | 3.00e-01 | 82.1% | 38.5% |