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ON470590.1__URE76537.1__X__00010
Bact-VirON470590.1__URE76537.1__X__00010
Identity
- Accession:
- ON470590 ↗
- Kingdom:
- phage
Quality
73.8
mean pLDDT
Taxonomy
TaxID: 2946110
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-43
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14555.13 best | UBA_4 | 24.0 | 3.80e-05 | 90.2% | 72.1% |
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1oaiA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.86 | 61.0 | 5.37e-01 | 82.9% | 52.5% |
| 1wivA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.86 | 56.0 | 4.58e-01 | 75.6% | 38.4% |
| 1aipH03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.85 | 59.0 | 5.44e-01 | 78.0% | 57.7% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.85 | 61.0 | 5.11e-01 | 82.9% | 47.0% |
| 2l2dA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.84 | 62.0 | 5.00e-01 | 82.9% | 43.8% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 67.0 | 5.97e-01 | 85.4% | 72.7% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.83 | 62.0 | 4.07e-01 | 80.5% | 20.9% |
| 2l4eA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.79 | 56.0 | 5.04e-01 | 82.9% | 54.4% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.79 | 58.0 | 4.81e-01 | 78.0% | 47.8% |
| 2di0A01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.79 | 54.0 | 5.26e-01 | 75.6% | 65.2% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 67.0 | 5.87e-01 | 92.7% | 74.1% |
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.77 | 59.0 | 4.68e-01 | 82.9% | 57.5% |
| 1ixkA01 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.75 | 53.0 | 3.91e-01 | 82.9% | 29.5% |
| 6vydA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.75 | 56.0 | 3.28e-01 | 80.5% | 16.4% |
| 4gbmA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 66.0 | 3.93e-01 | 100.0% | 24.7% |
| 1zx3A01 | 1.10.287.1020 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › NE0241-like | 0.74 | 51.0 | 4.03e-01 | 73.2% | 36.5% |
| 2rinA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.73 | 49.0 | 3.22e-01 | 70.7% | 16.3% |
| 3mc1A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.71 | 57.0 | 4.80e-01 | 87.8% | 53.7% |
| 4didB01 | 1.20.58.450 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog | 0.71 | 52.0 | 3.79e-01 | 80.5% | 29.8% |
| 3veaA02 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.70 | 49.0 | 4.55e-01 | 73.2% | 57.7% |
| 4pxoA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.70 | 47.0 | 3.34e-01 | 70.7% | 22.9% |
| 2nriB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 52.0 | 4.07e-01 | 87.8% | 45.7% |
| 5eoxB03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.67 | 58.0 | 4.05e-01 | 97.6% | 67.2% |
| 1howA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.66 | 48.0 | 2.97e-01 | 80.5% | 21.6% |
| 1owfA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.66 | 58.0 | 4.40e-01 | 100.0% | 90.6% |
| 1s6lA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 49.0 | 4.63e-01 | 85.4% | 75.0% |
| 6j4nC01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.65 | 53.0 | 3.11e-01 | 92.7% | 21.1% |
| 1qusA01 | 1.10.8.350 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial muramidase | 0.64 | 51.0 | 3.90e-01 | 100.0% | 53.1% |
| 2aamC00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 44.0 | 2.68e-01 | 78.0% | 15.4% |
| 3gagA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.61 | 49.0 | 3.22e-01 | 100.0% | 42.7% |
| 1y6uA01 | 3.90.105.50 | Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › | 0.58 | 42.0 | 4.03e-01 | 80.5% | 77.6% |
| 3vokA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 47.0 | 3.17e-01 | 97.6% | 63.6% |
| 4om8A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.56 | 41.0 | 3.06e-01 | 85.4% | 50.0% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3392055 | 103.1.1.143 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_ARIH2_N | 0.92 | 62.0 | 5.35e-01 | 75.6% | 48.3% |
| 3530883 | 103.1.1.28 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_8 | 0.91 | 64.0 | 6.17e-01 | 78.0% | 66.7% |
| 3607039 | 103.1.1.19 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › HYPK_UBA | 0.91 | 65.0 | 6.66e-01 | 82.9% | 77.5% |
| 3941050 | 103.1.1.28 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_8 | 0.90 | 63.0 | 6.41e-01 | 78.0% | 75.0% |
| 3924298 | 103.1.1.4 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TAP_C | 0.89 | 64.0 | 5.93e-01 | 82.9% | 62.0% |
| 3367165 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.88 | 63.0 | 5.46e-01 | 82.9% | 51.7% |
| 3608656 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.88 | 60.0 | 5.91e-01 | 75.6% | 67.4% |
| 2091493 | 103.1.1.19 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › HYPK_UBA | 0.88 | 63.0 | 6.22e-01 | 82.9% | 72.1% |
| 4953552 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.88 | 61.0 | 6.21e-01 | 80.5% | 75.0% |
| 3430767 | 103.1.1.22 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl | 0.88 | 63.0 | 5.28e-01 | 82.9% | 47.7% |
| 3873737 | 103.1.1.143 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_ARIH2_N | 0.88 | 62.0 | 5.43e-01 | 82.9% | 51.7% |
| 4025664 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.88 | 59.0 | 5.55e-01 | 75.6% | 58.0% |
| 4024033 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.88 | 62.0 | 5.60e-01 | 82.9% | 56.4% |
| 3803398 | 103.1.1.22 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl | 0.87 | 62.0 | 5.41e-01 | 82.9% | 51.7% |
| 3741553 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.87 | 62.0 | 6.34e-01 | 82.9% | 77.5% |
| 3612189 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.87 | 61.0 | 5.89e-01 | 75.6% | 66.7% |
| 3522732 | 103.1.1.143 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_ARIH2_N | 0.87 | 62.0 | 5.07e-01 | 82.9% | 44.3% |
| 3473478 | 103.1.1.4 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TAP_C | 0.86 | 61.0 | 5.74e-01 | 82.9% | 62.0% |
| 3240717 | 103.1.1.4 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TAP_C | 0.86 | 61.0 | 5.71e-01 | 82.9% | 62.0% |
| 3924698 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.86 | 63.0 | 6.16e-01 | 82.9% | 71.1% |
| 3621722 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.86 | 63.0 | 6.13e-01 | 82.9% | 71.1% |
| 3592892 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.86 | 59.0 | 6.02e-01 | 80.5% | 75.0% |
| 163972 | 103.1.1.28 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_8 | 0.85 | 61.0 | 5.11e-01 | 82.9% | 47.0% |
| 3435282 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.85 | 60.0 | 5.26e-01 | 82.9% | 51.7% |
| 3620421 | 103.1.1.143 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_ARIH2_N | 0.84 | 62.0 | 5.57e-01 | 82.9% | 58.2% |
| 3398979 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.84 | 59.0 | 5.98e-01 | 78.0% | 75.0% |
| 3741466 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.84 | 58.0 | 5.91e-01 | 80.5% | 75.0% |
| 3591175 | 103.1.1.22 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl | 0.84 | 61.0 | 5.18e-01 | 82.9% | 49.2% |
| 3224177 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.83 | 61.0 | 5.95e-01 | 82.9% | 71.1% |
| 3454650 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.83 | 61.0 | 6.20e-01 | 82.9% | 80.0% |
| 3022565 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.81 | 57.0 | 5.78e-01 | 82.9% | 75.6% |
| 3582492 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.81 | 60.0 | 3.78e-01 | 85.4% | 16.1% |
| 4012761 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.81 | 55.0 | 3.27e-01 | 70.7% | 10.7% |
| 3204020 | 103.1.1.1 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA | 0.80 | 54.0 | 5.15e-01 | 78.0% | 60.4% |
| 3629920 | 103.1.1.28 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_8 | 0.79 | 58.0 | 5.92e-01 | 82.9% | 80.0% |
| 3729504 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.79 | 58.0 | 5.87e-01 | 82.9% | 80.0% |
| 5056132 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.77 | 57.0 | 3.94e-01 | 80.5% | 36.1% |
| 3289310 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.76 | 65.0 | 5.85e-01 | 92.7% | 80.0% |
| 5063643 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.75 | 63.0 | 4.09e-01 | 92.7% | 73.6% |
| 4936146 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.72 | 54.0 | 4.94e-01 | 87.8% | 61.8% |
| 4030158 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.67 | 49.0 | 4.83e-01 | 85.4% | 75.6% |
| 4183750 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.67 | 60.0 | 4.76e-01 | 100.0% | 83.7% |
| 4020888 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.67 | 56.0 | 3.66e-01 | 100.0% | 74.4% |
| 3996571 | 101.1.2.53 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mnd1 | 0.67 | 52.0 | 4.95e-01 | 90.2% | 92.0% |
| 3249066 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.67 | 45.0 | 4.60e-01 | 78.0% | 75.0% |
| 4274974 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.67 | 58.0 | 4.36e-01 | 100.0% | 84.0% |
| 3640035 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 43.0 | 3.48e-01 | 73.2% | 32.9% |
| 5041148 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 50.0 | 4.28e-01 | 87.8% | 54.3% |
| 4665755 | 101.1.1.470 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Phage_terminase | 0.64 | 51.0 | 4.86e-01 | 97.6% | 76.0% |
| 3239718 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 41.0 | 3.64e-01 | 70.7% | 40.0% |
| 4162420 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.56 | 44.0 | 3.25e-01 | 95.1% | 48.0% |