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ON470592.1__URE76641.1__X__00064

Bact-Vir

ON470592.1__URE76641.1__X__00064

Identity

Accession:
ON470592 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Inibicvirus› Escherichia_phage_vB_EcoM-613R3

TaxID: 2946085

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-122
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17152.11 best CHASE8 118.6 1.80e-34 83.6% 100.0%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.77 67.0 6.28e-01 91.8% 93.8%
3cwfA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.73 61.0 6.48e-01 86.9% 100.0%
1p0zA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.72 63.0 6.19e-01 91.8% 98.5%
6pxyA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.67 54.0 5.56e-01 83.6% 100.0%
4jgpA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.67 49.0 5.58e-01 80.3% 100.0%
3c8cB02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 48.0 5.00e-01 76.2% 100.0%
3oovA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.63 45.0 4.02e-01 73.0% 80.5%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 29.0 3.54e-01 84.4% 67.6%
7pwfD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.62 44.0 5.03e-01 74.6% 100.0%
2f9jA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 30.0 3.61e-01 88.5% 68.8%
2j8aA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 30.0 3.44e-01 82.8% 66.7%
3kg0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 31.0 3.39e-01 88.5% 63.9%
4clcA00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.56 46.0 4.09e-01 86.1% 84.6%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 30.0 3.07e-01 85.2% 51.7%
2uvaG12 3.30.70.3330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 30.0 3.03e-01 88.5% 47.7%
7l5aA02 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.52 37.0 3.63e-01 75.4% 81.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3978824 223.8.1.2 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › CHASE8 0.99 97.0 8.37e-01 100.0% 71.8%
3966472 223.8.1.2 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › CHASE8 0.92 88.0 7.71e-01 100.0% 72.4%
3967419 223.1.1.18 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_4 0.85 76.0 7.01e-01 100.0% 76.0%
3970378 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.84 79.0 6.94e-01 100.0% 75.3%
3966202 223.8.1.0 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain 0.83 78.0 7.44e-01 100.0% 92.9%
3967866 223.1.1.61 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › SMP_2 0.83 77.0 7.06e-01 100.0% 78.7%
5015761 223.1.1.157 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_3 0.81 77.0 5.54e-01 100.0% 55.8%
4237365 223.1.1.61 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › SMP_2 0.80 71.0 7.10e-01 93.4% 93.6%
1323182 223.8.1.1 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › LapD_MoxY_N 0.80 71.0 6.94e-01 94.3% 88.5%
3982526 223.1.1.61 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › SMP_2 0.79 72.0 7.19e-01 95.9% 96.8%
4045675 223.1.1.81 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_WalK 0.79 75.0 6.22e-01 100.0% 74.0%
4009014 223.1.1.35 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.79 76.0 6.18e-01 100.0% 69.3%
5016939 223.1.1.189 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_3 0.79 74.0 6.27e-01 98.4% 80.0%
4987450 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.78 75.0 6.60e-01 100.0% 78.8%
4958967 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.78 65.0 6.28e-01 86.9% 94.8%
5016516 223.1.1.157 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_3 0.77 73.0 5.58e-01 100.0% 60.8%
4670966 223.1.1.81 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_WalK 0.77 65.0 6.25e-01 87.7% 98.5%
3948638 223.8.1.4 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › GAPES3 0.77 71.0 6.44e-01 100.0% 79.4%
3941595 223.1.1.35 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.77 73.0 5.97e-01 100.0% 69.8%
4676268 223.1.1.35 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.77 73.0 5.18e-01 100.0% 44.7%
3973081 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.77 72.0 6.30e-01 100.0% 78.9%
4010374 223.1.1.156 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAPES3 0.77 65.0 6.54e-01 89.3% 96.7%
3788468 223.1.1.75 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HAMP 0.76 71.0 4.80e-01 99.2% 41.5%
3979313 223.1.1.35 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.76 73.0 5.95e-01 100.0% 69.8%
4413356 223.1.1.18 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_4 0.76 71.0 6.09e-01 100.0% 76.8%
4135073 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.76 72.0 5.39e-01 100.0% 53.3%
3282901 223.1.1.35 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.75 71.0 4.96e-01 100.0% 40.3%
352473 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.75 71.0 5.42e-01 100.0% 58.0%
3587963 223.1.1.35 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.74 64.0 5.73e-01 90.2% 81.2%
4541933 223.1.1.43 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.74 68.0 6.20e-01 100.0% 87.5%
6838 223.1.1.35 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.72 63.0 6.19e-01 91.8% 98.5%
3973210 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.71 59.0 6.31e-01 86.1% 100.0%
4980845 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.71 60.0 4.74e-01 88.5% 60.0%
4976020 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 32.0 3.11e-01 92.6% 39.3%
4431434 223.1.1.43 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.69 63.0 5.64e-01 100.0% 75.9%
4680230 223.8.1.0 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain 0.69 60.0 6.20e-01 93.4% 100.0%
5073525 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.66 45.0 4.54e-01 70.5% 85.6%
3968365 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 58.0 5.21e-01 97.5% 77.0%
4484942 223.8.1.1 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › LapD_MoxY_N 0.63 53.0 5.27e-01 92.6% 95.2%
5071005 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 29.0 2.87e-01 89.3% 40.0%
4941274 223.8.1.0 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain 0.61 49.0 4.90e-01 85.2% 100.0%
4971503 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.60 44.0 4.38e-01 75.4% 83.6%
3630069 223.1.1.101 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30734 0.59 55.0 3.43e-01 100.0% 50.0%
1141944 223.8.1.1 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › LapD_MoxY_N 0.59 53.0 5.27e-01 95.9% 91.4%
3255285 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.59 40.0 4.06e-01 70.5% 78.0%
4972248 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 31.0 3.12e-01 90.2% 46.9%
4929422 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 32.0 3.18e-01 86.9% 49.2%
3637401 4081.1.1.8 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 0.57 32.0 2.65e-01 74.6% 29.1%
5024071 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 40.0 4.13e-01 71.3% 78.3%
4928738 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 33.0 3.25e-01 87.7% 52.3%
5044707 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.57 30.0 3.00e-01 91.0% 48.0%
3280377 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 39.0 3.91e-01 77.0% 70.4%
5050158 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 43.0 3.83e-01 82.0% 79.4%
5078870 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.55 30.0 2.88e-01 88.5% 43.6%
3597515 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 38.0 3.84e-01 71.3% 76.0%
4909079 3019.1.1.9 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › FliD_C, Flagellin_IN 0.54 34.0 3.52e-01 82.0% 64.7%
4946840 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.93e-01 72.1% 86.1%
2083577 3019.1.1.1 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.54 34.0 3.40e-01 80.3% 60.5%
4187379 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.92e-01 73.8% 85.8%
D2 high residues 125-220
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jioA02 1.20.140.50 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › alix/aip1 like domains 0.84 46.0 3.90e-01 85.4% 36.4%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.78 55.0 4.26e-01 100.0% 35.2%
1fs0G02 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.77 43.0 4.46e-01 75.0% 59.6%
3lnrA00 1.20.120.1530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.76 69.0 5.79e-01 100.0% 94.4%
1dn1B00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 56.0 4.20e-01 78.1% 56.3%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.74 56.0 5.63e-01 79.2% 94.8%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 37.0 3.67e-01 77.1% 49.0%
4mtxD00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.72 47.0 4.72e-01 95.8% 66.3%
2rd0B00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 48.0 4.26e-01 100.0% 48.2%
3nyjA00 1.20.120.770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain 0.65 56.0 4.57e-01 94.8% 74.6%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 45.0 3.27e-01 74.0% 29.1%
1y1uA01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.63 47.0 3.81e-01 80.2% 67.2%
7aalA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.61 53.0 3.93e-01 97.9% 96.2%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.60 47.0 3.78e-01 83.3% 63.4%
7wivA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 43.0 3.10e-01 79.2% 85.7%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3984528 5043.2.1.0 ↗ extended segments › Sensor proteins transmembrane domains › NarQ transmembrane domain › NarQ transmembrane domain 0.97 93.0 9.44e-01 99.0% 100.0%
3627448 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.87 43.0 4.10e-01 81.2% 42.7%
3757451 3755.3.1.297 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 0.84 50.0 4.11e-01 84.4% 36.3%
3589446 2004.1.1.301 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_27 0.79 49.0 3.09e-01 91.7% 12.8%
3608116 5086.1.1.177 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › KIF9 0.78 49.0 4.20e-01 95.8% 42.1%
3634896 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.77 47.0 4.44e-01 86.5% 51.3%
3627942 3755.4.1.1 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PI3K_P85_iSH2 0.76 52.0 4.23e-01 99.0% 38.9%
4031283 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 51.0 4.39e-01 100.0% 45.3%
3995294 1065.1.1.0 ↗ alpha bundles › SPX domain › SPX domain › SPX domain 0.74 55.0 4.95e-01 76.0% 88.0%
3755586 3291.1.1.118 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › KIF9 0.73 45.0 3.98e-01 91.7% 42.9%
3550436 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.72 38.0 3.72e-01 79.2% 48.1%
4775818 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.71 47.0 3.73e-01 96.9% 34.2%
4576287 3755.3.1.471 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Paralemmin 0.69 45.0 3.82e-01 95.8% 40.6%
3923557 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.69 48.0 3.75e-01 99.0% 34.0%
3541873 3755.3.1.297 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 0.69 47.0 4.14e-01 99.0% 47.9%
1171038 3755.3.1.148 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CT398_CC 0.69 46.0 3.69e-01 100.0% 34.6%
3944006 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.69 45.0 4.06e-01 93.8% 50.4%
3934585 3755.3.1.465 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A 0.68 48.0 4.16e-01 90.6% 47.3%
4010416 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 44.0 3.99e-01 92.7% 50.4%
3581368 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.62 44.0 3.81e-01 94.8% 47.3%
4956384 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.59 43.0 3.42e-01 77.1% 39.0%
3987389 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 47.0 2.96e-01 94.8% 30.9%
D3 high residues 231-378
PDB
Domain cluster: rep: CAKLQF020000002.1__CAH1073768.1__SAMEA5780031_00655__00283__D519-683
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00990.27 best GGDEF 127.0 8.40e-37 98.7% 91.9%