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ON470595.1URC09355.1X__00001

Bact-Vir

ON470595.1__URC09355.1__X__00001

Identity

Accession:: ON470595 ↗
Kingdom:: phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Escherichia_phage_vB_EcoS-683R6

TaxID: 2946114

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-88

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03806.20 best	ABG_transport	62.1	4.30e-17	100.0%	12.6%

CATH (22)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2kl8A00	3.30.70.600	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10	0.67	36.0	3.22e-01	91.7%	37.6%
2l4mA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.62	33.0	3.14e-01	81.7%	40.6%
1i1gA02	3.30.70.920	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain	0.61	31.0	2.84e-01	100.0%	35.1%
3bmxA01	3.20.20.300	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain	0.59	41.0	2.48e-01	71.7%	91.4%
1in0A01	3.30.70.860	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.59	30.0	2.88e-01	91.7%	41.4%
3aeiA00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.58	47.0	4.04e-01	88.3%	66.0%
2zdiB00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.58	44.0	3.70e-01	83.3%	65.1%
6we5A00	3.90.80.10	Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase	0.58	50.0	3.51e-01	100.0%	97.1%
2eyqA07	3.90.1150.50	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain	0.58	37.0	2.83e-01	93.3%	25.9%
5kbwB00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.57	48.0	3.56e-01	100.0%	57.3%
1p4xA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	42.0	3.37e-01	81.7%	59.8%
4arvA02	3.40.50.1240	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like	0.56	43.0	3.36e-01	83.3%	43.7%
5y6iA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.56	39.0	3.66e-01	73.3%	89.0%
3f8xB00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.54	41.0	3.22e-01	81.7%	72.7%
1lxnA00	3.30.70.930	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.54	37.0	3.15e-01	100.0%	43.9%
1qviA01	1.20.120.720	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain	0.53	43.0	3.59e-01	96.7%	85.2%
1vq0A02	3.90.1280.10	Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like	0.53	35.0	3.59e-01	71.7%	73.7%
3p5nA00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.52	45.0	3.33e-01	100.0%	38.1%
1pyiA01	4.10.240.10	Few Secondary Structures › Irregular › CD2-Gal4 › Zn(2)-C6 fungal-type DNA-binding domain	0.52	35.0	3.55e-01	71.7%	74.2%
7l9pK01	3.30.900.10	Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain	0.52	43.0	3.45e-01	91.7%	100.0%
3mk7C01	6.10.280.130	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	44.0	3.86e-01	100.0%	100.0%
5eriA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	44.0	3.25e-01	96.7%	77.1%

ECOD (44)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4032976	3355.1.1.3 ↗	alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › ABG_transport	0.95	89.0	5.07e-01	100.0%	12.2%
3942409	3355.1.1.3 ↗	alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › ABG_transport	0.92	85.0	4.90e-01	100.0%	12.7%
None	—		0.92	85.0	4.87e-01	100.0%	12.4%
4980798	304.120.1.6 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer	0.69	41.0	3.76e-01	93.3%	46.7%
3217457	105.1.1.1 ↗	alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH	0.68	50.0	4.34e-01	93.3%	52.2%
3832390	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.61	41.0	3.21e-01	75.0%	33.6%
3971048	304.14.1.1 ↗	a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR	0.61	32.0	3.09e-01	90.0%	41.4%
4983373	2003.1.5.46 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS	0.60	52.0	3.58e-01	100.0%	85.6%
5083528	101.1.11.0 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix	0.60	42.0	3.82e-01	73.3%	56.5%
5042930	3563.1.1.1 ↗	alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC	0.60	43.0	2.95e-01	100.0%	19.4%
3614763	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.59	48.0	3.80e-01	88.3%	49.2%
3831785	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.59	34.0	2.88e-01	91.7%	34.0%
3414803	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.59	50.0	3.09e-01	93.3%	53.6%
5049104	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.59	44.0	3.25e-01	81.7%	37.5%
4083451	192.2.1.20 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ASNSD1-SEP	0.58	47.0	4.31e-01	90.0%	83.7%
3287378	601.23.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III	0.57	49.0	3.20e-01	95.0%	56.5%
3630540	3877.1.1.0 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC	0.57	51.0	3.32e-01	100.0%	42.3%
4527101	101.1.2.31 ↗	alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha	0.57	46.0	3.38e-01	88.3%	41.2%
3187819	3736.1.1.0 ↗	alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2	0.57	40.0	2.91e-01	73.3%	55.5%
3283204	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.56	29.0	2.83e-01	100.0%	40.0%
4662222	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.56	42.0	3.38e-01	81.7%	55.8%
4329890	101.1.2.31 ↗	alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha	0.56	45.0	3.35e-01	88.3%	43.3%
3833302	101.1.17.6 ↗	alpha arrays › HTH › HTH › FF domain › XH	0.56	39.0	3.35e-01	73.3%	71.6%
3420416	101.1.2.245 ↗	alpha arrays › HTH › HTH › winged helix domain › PORR	0.55	42.0	3.29e-01	81.7%	63.1%
3929962	3877.1.1.0 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC	0.55	49.0	3.21e-01	100.0%	43.9%
3782917	109.4.1.1289 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30856	0.55	45.0	2.75e-01	90.0%	44.0%
3550392	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.55	43.0	3.08e-01	86.7%	53.5%
3620847	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.55	49.0	4.00e-01	100.0%	83.6%
4987009	3837.1.1.1 ↗	alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847	0.54	45.0	3.33e-01	90.0%	42.0%
3710958	1128.1.1.0 ↗	alpha bundles › LYR protein › LYR protein › LYR protein	0.54	48.0	4.13e-01	100.0%	64.2%
4386701	310.2.1.35 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PF28954	0.54	41.0	3.08e-01	81.7%	76.6%
3497680	5054.1.1.63 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, YVC1_C	0.53	43.0	2.66e-01	95.0%	14.7%
4234747	4203.1.1.1 ↗	few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33	0.53	36.0	3.63e-01	71.7%	72.4%
4478999	101.1.2.31 ↗	alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha	0.53	40.0	2.93e-01	83.3%	41.6%
3513803	377.1.1.92 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LUC7	0.52	45.0	4.09e-01	95.0%	72.5%
4930302	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.52	27.0	3.29e-01	100.0%	80.0%
3627712	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.52	44.0	2.60e-01	100.0%	12.3%
3781172	101.1.2.517 ↗	alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD	0.51	38.0	2.39e-01	83.3%	20.5%
5000602	4018.1.1.2 ↗	a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P	0.51	42.0	3.28e-01	100.0%	81.9%
4510477	2002.1.1.33 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_20	0.51	44.0	2.63e-01	100.0%	48.0%
3499106	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.51	45.0	2.75e-01	100.0%	16.2%
3367703	101.1.1.121 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3	0.51	40.0	3.13e-01	85.0%	44.8%
5028061	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.51	40.0	3.60e-01	90.0%	63.3%
5029922	101.1.2.15 ↗	alpha arrays › HTH › HTH › winged helix domain › MarR	0.50	35.0	3.19e-01	75.0%	80.0%

D2 high residues 94-202

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03806.20 best	ABG_transport	139.2	1.90e-40	100.0%	21.5%

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3a11B01	1.20.120.420	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1	0.66	49.0	4.68e-01	77.1%	82.4%
3rlbA00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.66	50.0	4.28e-01	80.7%	98.9%
2raeA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.64	51.0	4.79e-01	87.2%	84.7%
2dg7A00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.64	54.0	4.52e-01	91.7%	82.3%
1aa7A02	1.10.10.180	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Influenza matrix protein M1, N-terminal subdomain 2	0.63	40.0	4.52e-01	78.9%	88.5%
2af7D00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.61	42.0	4.14e-01	72.5%	89.3%
7qpgW01	1.10.357.150	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.60	50.0	4.19e-01	91.7%	80.5%
2qk1A01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.58	41.0	3.21e-01	74.3%	45.6%
2genA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.57	43.0	3.68e-01	80.7%	88.3%
4tkrA00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.57	45.0	3.88e-01	87.2%	55.7%
1gaxA02	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.55	45.0	3.58e-01	89.9%	59.9%
2jbwA01	1.20.1440.110	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase	0.53	37.0	3.85e-01	73.4%	100.0%
6nmnA02	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.52	36.0	3.48e-01	71.6%	82.0%
1b0bA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.52	37.0	3.46e-01	74.3%	74.5%
2i0mA01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.52	37.0	3.76e-01	75.2%	98.1%
3i7aA00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.51	41.0	3.06e-01	86.2%	85.3%
2nrlA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.51	38.0	3.55e-01	80.7%	75.9%
2ot4A03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.51	29.0	2.97e-01	98.2%	55.1%

ECOD (19)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3942409	3355.1.1.3 ↗	alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › ABG_transport	0.94	90.0	5.65e-01	100.0%	23.9%
2642640	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.70	52.0	4.71e-01	78.0%	80.5%
3683126	109.3.1.319 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Adaptin_N	0.65	44.0	4.13e-01	70.6%	56.4%
4472632	604.12.1.3 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Thia_YuaJ	0.64	51.0	4.28e-01	87.2%	56.9%
3257344	189.1.1.2 ↗	alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP	0.61	44.0	3.69e-01	76.1%	79.5%
3761098	4070.1.1.0 ↗	alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like	0.60	49.0	4.27e-01	90.8%	99.4%
3889416	109.4.1.442 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › THOC2_N	0.59	44.0	3.96e-01	79.8%	58.1%
2029562	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.58	41.0	3.47e-01	75.2%	61.9%
3253260	5069.1.3.4 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › CybS	0.58	34.0	3.47e-01	91.7%	57.8%
3577670	189.1.1.2 ↗	alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP	0.56	44.0	3.55e-01	86.2%	76.5%
5077574	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.56	45.0	4.04e-01	88.1%	98.7%
3494437	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	45.0	3.36e-01	92.7%	51.3%
None	—		0.54	38.0	3.76e-01	75.2%	67.5%
3842806	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	41.0	3.91e-01	87.2%	67.4%
3174588	633.23.1.9 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7	0.53	42.0	3.49e-01	100.0%	47.9%
1007309	633.6.1.1 ↗	alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1	0.52	33.0	2.95e-01	100.0%	42.7%
3589835	5069.1.3.26 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF1622	0.52	33.0	3.38e-01	100.0%	63.6%
4960291	1075.1.2.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain	0.52	43.0	3.93e-01	94.5%	96.8%
5027021	604.5.1.2 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU	0.51	36.0	3.62e-01	76.1%	93.0%