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ON470595.1__URC09362.1__X__00008

Bact-Vir

ON470595.1__URC09362.1__X__00008

Identity

Accession:
ON470595 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Escherichia_phage_vB_EcoS-683R6

TaxID: 2946114

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 69-187
PDB
Domain cluster: rep: CAKLQF020000018.1__CAH1088653.1__SAMEA5780031_02972__00014__D111-218
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01713.28 best Smr 81.8 4.40e-23 68.9% 100.0%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zqeA00 3.30.1370.110 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.95 63.0 7.74e-01 73.1% 100.0%
3qd7X00 3.30.1370.110 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.94 79.0 7.61e-01 85.7% 77.9%
1tigA00 3.30.110.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain 0.71 51.0 5.80e-01 77.3% 100.0%
3duwA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 51.0 4.11e-01 75.6% 79.5%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.68 48.0 5.52e-01 73.9% 100.0%
2crqA01 3.30.110.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain 0.67 47.0 5.38e-01 72.3% 100.0%
2efjA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 51.0 4.18e-01 79.8% 93.9%
4pcqA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.67 34.0 4.06e-01 89.1% 71.4%
1xppD00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.66 33.0 3.62e-01 74.8% 56.4%
4bluB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 48.0 3.67e-01 76.5% 80.8%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.65 46.0 5.18e-01 76.5% 93.5%
1i9gA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 49.0 4.17e-01 78.2% 84.8%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 30.0 3.78e-01 84.0% 71.6%
4atnA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 49.0 4.29e-01 81.5% 89.0%
3igrA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 47.0 4.08e-01 81.5% 50.3%
5xogK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.63 33.0 3.38e-01 77.3% 52.2%
4aybL00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.63 32.0 3.65e-01 75.6% 63.7%
6gmhK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.63 33.0 3.41e-01 78.2% 52.2%
3mtiB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 47.0 4.12e-01 79.0% 97.2%
6ruiK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.62 34.0 3.64e-01 78.2% 60.2%
6s9vB01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 46.0 3.28e-01 78.2% 81.7%
3o4fH02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 46.0 3.73e-01 78.2% 72.9%
4u9rA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 34.0 3.97e-01 88.2% 78.0%
1qmhA01 3.65.10.20 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain 0.60 44.0 3.45e-01 74.8% 45.2%
2dnnA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 29.0 3.42e-01 75.6% 65.9%
1x5oA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 29.0 3.37e-01 75.6% 62.8%
2dgwA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 28.0 3.39e-01 76.5% 66.3%
2mzqA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 36.0 3.90e-01 86.6% 72.3%
3r96B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 41.0 3.62e-01 72.3% 49.7%
1ro5A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 44.0 3.78e-01 79.0% 50.8%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 34.0 3.65e-01 87.4% 66.3%
1a9nD00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 30.0 3.39e-01 73.9% 62.4%
7f4oA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 43.0 3.64e-01 77.3% 48.5%
1fjcA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 29.0 3.16e-01 77.3% 56.2%
3gz7B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 31.0 3.35e-01 84.0% 61.2%
7xx8A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 30.0 3.56e-01 76.5% 72.8%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.57 34.0 3.74e-01 89.9% 72.9%
2divA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 29.0 3.35e-01 76.5% 67.1%
2xs2A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 29.0 3.34e-01 74.8% 64.4%
1x4eA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 29.0 3.35e-01 73.9% 67.1%
3tebB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.56 43.0 3.37e-01 83.2% 88.3%
2jgbA01 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.55 34.0 3.00e-01 89.1% 41.6%
7s7rA01 2.60.40.2860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 38.0 3.66e-01 73.1% 71.4%
1s79A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 28.0 3.02e-01 78.2% 56.3%
5fiiB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 27.0 3.21e-01 91.6% 74.4%
5w0hA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 26.0 3.06e-01 76.5% 68.8%
2cq4A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 28.0 3.10e-01 89.1% 64.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4158753 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.97 62.0 7.84e-01 70.6% 100.0%
4208386 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.97 62.0 7.74e-01 70.6% 97.5%
4439241 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.96 77.0 7.29e-01 88.2% 72.6%
4337404 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.95 62.0 7.18e-01 71.4% 87.8%
3967107 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.95 78.0 7.66e-01 84.0% 80.0%
1394869 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.94 79.0 7.61e-01 85.7% 77.9%
4530413 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.94 61.0 7.57e-01 70.6% 100.0%
1298450 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.92 62.0 7.44e-01 73.1% 98.8%
4246571 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.92 73.0 7.18e-01 87.4% 77.6%
4467863 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.92 68.0 7.85e-01 80.7% 100.0%
3964968 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.88 71.0 7.37e-01 85.7% 90.0%
3380667 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.88 58.0 6.49e-01 73.1% 84.2%
3714402 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.83 56.0 5.35e-01 70.6% 60.7%
3596806 328.7.1.0 ↗ a+b two layers › IF3-like › Smr domain › Smr domain 0.80 54.0 5.90e-01 70.6% 82.0%
3638350 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.77 63.0 5.99e-01 84.9% 100.0%
3196489 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.77 55.0 5.70e-01 73.1% 80.0%
3512301 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.72 52.0 3.71e-01 73.1% 38.1%
4314924 328.3.1.1 ↗ a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C 0.69 54.0 5.62e-01 82.4% 89.1%
4555708 328.3.1.2 ↗ a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › mIF3 0.68 52.0 5.38e-01 79.0% 87.3%
3520570 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.68 51.0 5.27e-01 77.3% 89.1%
3557282 328.3.1.1 ↗ a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C 0.68 49.0 4.92e-01 74.8% 75.0%
5077001 305.1.1.2 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.67 34.0 3.87e-01 75.6% 64.4%
2464383 2003.1.5.37 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RsmJ 0.67 48.0 3.62e-01 74.8% 78.1%
4020104 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.65 51.0 3.61e-01 84.0% 68.6%
4928630 305.1.1.2 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.65 33.0 3.75e-01 74.8% 63.3%
3600809 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.65 48.0 4.30e-01 77.3% 60.6%
3617145 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.65 47.0 3.82e-01 74.8% 75.3%
3196562 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 44.0 3.96e-01 73.1% 50.3%
4016320 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.63 33.0 3.48e-01 84.0% 56.2%
3618706 207.1.1.247 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF28313 0.62 45.0 3.18e-01 73.9% 25.8%
4188964 2003.1.5.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ 0.62 48.0 4.13e-01 84.0% 83.5%
3782432 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.61 32.0 2.61e-01 79.0% 26.2%
3942261 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.61 33.0 3.61e-01 84.9% 63.0%
3208958 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.60 48.0 3.52e-01 84.9% 91.4%
5070676 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.60 31.0 3.41e-01 78.2% 60.0%
3209679 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 32.0 3.59e-01 76.5% 65.3%
3220523 304.9.1.77 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28441 0.59 28.0 3.08e-01 76.5% 53.0%
3518639 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.58 29.0 3.30e-01 74.8% 62.2%
4928084 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.58 32.0 3.50e-01 86.6% 65.3%
3281978 304.159.1.1 ↗ a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C 0.57 34.0 3.67e-01 81.5% 69.0%
3969151 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.57 29.0 3.41e-01 79.0% 68.8%
3486448 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 31.0 3.40e-01 87.4% 63.0%
4460279 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 31.0 3.39e-01 86.6% 66.3%
4491144 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.54 29.0 3.16e-01 79.0% 62.1%
4025816 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 30.0 3.37e-01 81.5% 69.5%
3650950 304.9.1.7 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › XS 0.53 31.0 2.46e-01 77.3% 27.3%
3279592 304.4.1.14 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.51 37.0 3.61e-01 74.8% 93.8%
4608731 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 29.0 2.96e-01 86.6% 52.5%