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ON470598.1__URC09499.1__X__00023
Bact-VirON470598.1__URC09499.1__X__00023
Identity
- Accession:
- ON470598 ↗
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Taxonomy
TaxID: 2946104
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 149-235
Domain cluster:
rep: MW478289.1__QTZ82801.1__phiCpA_00029__00029__D150-251
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fcgB00 | 2.60.40.3110 | Mainly Beta › Sandwich › Immunoglobulin-like › Outer membrane usher protein | 0.62 | 38.0 | 4.11e-01 | 100.0% | 74.6% |
| 4mt1A03 | 3.30.70.1320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like | 0.60 | 43.0 | 4.17e-01 | 75.9% | 95.9% |
| 3cjiB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 49.0 | 3.62e-01 | 92.0% | 58.4% |
| 3vbhC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 49.0 | 3.58e-01 | 92.0% | 57.9% |
| 3jb4C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 47.0 | 3.49e-01 | 92.0% | 52.7% |
| 2debA03 | 3.30.559.70 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Choline/Carnitine o-acyltransferase, domain 2 | 0.57 | 44.0 | 3.13e-01 | 85.1% | 100.0% |
| 2epgB00 | 3.90.1860.10 | Alpha Beta › Alpha-Beta Complex › tRNA-splicing ligase RtcB › tRNA-splicing ligase RtcB | 0.56 | 45.0 | 2.94e-01 | 90.8% | 61.6% |
| 5b08A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 43.0 | 4.13e-01 | 82.8% | 96.0% |
| 1ihmB01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 45.0 | 3.44e-01 | 92.0% | 59.5% |
| 2gh8A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 45.0 | 3.51e-01 | 92.0% | 64.4% |
| 1fmd200 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 44.0 | 3.39e-01 | 92.0% | 58.3% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.54 | 44.0 | 4.26e-01 | 94.3% | 79.2% |
| 2ia1A01 | 3.30.500.20 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains | 0.54 | 29.0 | 2.70e-01 | 100.0% | 35.3% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 28.0 | 3.35e-01 | 95.4% | 72.6% |
| 4qamB00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.54 | 39.0 | 3.22e-01 | 79.3% | 91.1% |
| 1rjjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 40.0 | 3.75e-01 | 79.3% | 88.3% |
| 4fy1100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 44.0 | 3.40e-01 | 92.0% | 70.0% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 43.0 | 4.18e-01 | 86.2% | 100.0% |
| 2jgbA01 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.53 | 42.0 | 3.38e-01 | 85.1% | 51.4% |
| 1jb0D00 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.53 | 41.0 | 3.57e-01 | 90.8% | 52.9% |
| 5h80B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 43.0 | 3.17e-01 | 90.8% | 82.1% |
| 1ryp200 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 42.0 | 3.18e-01 | 90.8% | 83.3% |
| 1t8rA01 | 3.30.1730.10 | Alpha Beta › 2-Layer Sandwich › amp nucleosidase, domain 1 › AMP nucleoside phosphorylase, N-terminal domain | 0.51 | 42.0 | 3.57e-01 | 93.1% | 72.8% |
| 2z9iC01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 33.0 | 3.29e-01 | 92.0% | 62.0% |
| 5xzqF00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 39.0 | 3.79e-01 | 85.1% | 98.1% |
| 6frlA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 37.0 | 2.35e-01 | 79.3% | 14.5% |
| 1jx4A04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.50 | 38.0 | 3.73e-01 | 93.1% | 74.5% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3972650 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.71 | 58.0 | 5.36e-01 | 88.5% | 97.3% |
| 3331421 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 41.0 | 4.60e-01 | 83.9% | 96.9% |
| 4945047 | 304.159.1.0 ↗ | a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB | 0.60 | 46.0 | 4.53e-01 | 82.8% | 86.3% |
| 4965849 | 3435.1.1.9 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF4747 | 0.60 | 53.0 | 3.84e-01 | 100.0% | 36.1% |
| 3588189 | 12.1.1.4 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-L-AF_C | 0.59 | 42.0 | 3.75e-01 | 88.5% | 52.0% |
| 3675525 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 35.0 | 3.80e-01 | 90.8% | 73.5% |
| 3929299 | 1116.1.1.2 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › MCLN_ECD | 0.58 | 52.0 | 3.83e-01 | 100.0% | 63.5% |
| 3062996 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.58 | 40.0 | 3.49e-01 | 92.0% | 46.0% |
| 3411973 | 1116.1.1.2 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › MCLN_ECD | 0.57 | 51.0 | 3.91e-01 | 100.0% | 59.5% |
| 3619356 | 1116.1.1.2 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › MCLN_ECD | 0.57 | 51.0 | 3.89e-01 | 100.0% | 58.1% |
| 3567723 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.57 | 40.0 | 2.83e-01 | 72.4% | 39.2% |
| 3309702 | 207.1.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 | 0.57 | 48.0 | 3.03e-01 | 97.7% | 22.8% |
| 4028174 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.56 | 47.0 | 4.09e-01 | 93.1% | 71.1% |
| 3414649 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.54 | 45.0 | 3.94e-01 | 93.1% | 71.1% |
| 1444532 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.54 | 44.0 | 3.40e-01 | 92.0% | 70.0% |
| 4872939 | 10.2.1.13 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat | 0.53 | 43.0 | 3.37e-01 | 92.0% | 63.2% |
| 3818973 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.53 | 44.0 | 3.92e-01 | 93.1% | 73.1% |
| 4998349 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.53 | 45.0 | 3.52e-01 | 98.9% | 89.9% |
| 3445885 | 12.3.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid | 0.53 | 43.0 | 2.80e-01 | 90.8% | 74.6% |
| 3601652 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.53 | 43.0 | 3.99e-01 | 90.8% | 93.9% |
| 3730113 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 45.0 | 2.81e-01 | 100.0% | 18.8% |
| 5075262 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.52 | 35.0 | 2.37e-01 | 87.4% | 17.4% |
| 3267955 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 46.0 | 4.30e-01 | 100.0% | 83.6% |
| 4033337 | 302.2.1.0 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit | 0.52 | 42.0 | 3.90e-01 | 100.0% | 69.6% |
| 3407163 | 304.48.1.6 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A | 0.51 | 42.0 | 3.84e-01 | 90.8% | 96.6% |
| 3364333 | 12.3.1.18 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydr_116N | 0.51 | 46.0 | 3.00e-01 | 100.0% | 82.3% |
| 4982347 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 45.0 | 4.19e-01 | 100.0% | 91.8% |
| 3888005 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 45.0 | 4.19e-01 | 100.0% | 85.5% |
| 4932825 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 37.0 | 3.79e-01 | 90.8% | 78.8% |
| 3245711 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 40.0 | 3.72e-01 | 90.8% | 80.8% |
| 3599867 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.51 | 43.0 | 3.90e-01 | 94.3% | 79.2% |
| 4882965 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.50 | 42.0 | 3.59e-01 | 93.1% | 72.1% |
| 4072922 | 304.3.2.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › Peptide methionine sulfoxide reductase › PMSR | 0.50 | 41.0 | 3.38e-01 | 89.7% | 77.0% |
D2
medium
residues 1-43_57-90_243-286
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1omoA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.62 | 53.0 | 4.91e-01 | 95.0% | 73.8% |
| 1x7dB01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.59 | 52.0 | 4.68e-01 | 96.7% | 68.6% |
| 4jgwA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.58 | 37.0 | 3.40e-01 | 87.6% | 49.4% |
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 39.0 | 4.08e-01 | 87.6% | 77.1% |
| 1kmoA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.57 | 44.0 | 2.87e-01 | 81.0% | 86.1% |
| 4h5bA00 | 3.30.1460.70 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.56 | 46.0 | 4.28e-01 | 88.4% | 79.6% |
| 2je2A00 | 3.50.70.20 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › Cytochrome P460 | 0.54 | 41.0 | 3.74e-01 | 86.0% | 61.1% |
| 4i0nA00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.53 | 45.0 | 3.49e-01 | 90.9% | 73.1% |
| 4rlcA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.52 | 37.0 | 3.63e-01 | 74.4% | 82.2% |
| 2e3nA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 38.0 | 3.08e-01 | 76.9% | 93.5% |
| 3anzC00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.52 | 40.0 | 3.02e-01 | 81.8% | 80.3% |
| 2z6oA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.51 | 43.0 | 3.93e-01 | 95.0% | 68.7% |
| 5u1xA02 | 2.60.490.10 | Mainly Beta › Sandwich › atp-gated p2x4 ion channel fold › atp-gated p2x4 ion channel domain | 0.50 | 38.0 | 2.92e-01 | 78.5% | 99.3% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4124708 | 3692.1.1.1 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall | 0.66 | 51.0 | 4.56e-01 | 95.9% | 59.1% |
| 5036533 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.61 | 56.0 | 4.53e-01 | 100.0% | 93.3% |
| 4023264 | 3692.1.1.0 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain | 0.60 | 49.0 | 4.48e-01 | 95.0% | 66.3% |
| 4955607 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.59 | 53.0 | 4.41e-01 | 98.3% | 96.7% |
| 5064859 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.59 | 35.0 | 2.77e-01 | 100.0% | 28.3% |
| 3391001 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.56 | 45.0 | 3.65e-01 | 84.3% | 54.5% |
| 5017990 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 37.0 | 3.90e-01 | 87.6% | 75.5% |
| 5038627 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.55 | 44.0 | 3.23e-01 | 86.0% | 88.3% |
| 4256420 | 5.1.3.134 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR, BNR_2 | 0.54 | 44.0 | 3.19e-01 | 90.9% | 44.4% |
| 4491189 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.54 | 34.0 | 3.61e-01 | 76.0% | 72.4% |
| 3586856 | 2004.1.1.514 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B | 0.54 | 42.0 | 2.90e-01 | 82.6% | 35.7% |
| 3964215 | 897.2.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E › Adhesin_E | 0.53 | 40.0 | 4.13e-01 | 79.3% | 93.0% |
| 5042182 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.53 | 37.0 | 4.04e-01 | 80.2% | 88.0% |
| 3990957 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.52 | 41.0 | 4.04e-01 | 87.6% | 81.5% |
| 4023951 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 44.0 | 3.23e-01 | 95.9% | 58.8% |
| 4948537 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.50 | 40.0 | 2.86e-01 | 83.5% | 43.9% |
| 4019390 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 41.0 | 2.92e-01 | 90.9% | 39.8% |
| 3936676 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.50 | 35.0 | 3.88e-01 | 71.9% | 97.9% |