Back to structures

ON470614.1__URC10121.1__X__00010

Bact-Vir

ON470614.1__URC10121.1__X__00010

Identity

Accession:
ON470614 ↗
Kingdom:
phage

Quality

69.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 54-120
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14163.12 best SieB 44.8 1.30e-11 88.1% 42.9%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 49.0 4.65e-01 97.0% 54.9%
1xwrC00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 55.0 5.29e-01 82.1% 78.9%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.71 32.0 3.35e-01 88.1% 44.3%
2d4uB00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.68 49.0 3.69e-01 74.6% 81.3%
2uuzB00 1.10.10.2020 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Host-nuclease inhibitor protein Gam 0.67 60.0 5.51e-01 98.5% 84.7%
1aroP05 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.67 48.0 3.42e-01 82.1% 24.4%
1w36F02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 55.0 4.71e-01 88.1% 58.0%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.67 47.0 4.73e-01 73.1% 90.9%
1ulyA02 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.66 55.0 4.82e-01 92.5% 60.4%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 48.0 4.24e-01 79.1% 54.3%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 50.0 3.94e-01 80.6% 41.2%
5xnyA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.65 47.0 4.15e-01 83.6% 49.5%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.65 54.0 4.08e-01 94.0% 42.1%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.64 50.0 5.01e-01 86.6% 86.8%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 3.82e-01 73.1% 68.6%
4kh7B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 39.0 3.22e-01 85.1% 36.4%
3nuwA02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.61 47.0 3.44e-01 86.6% 53.2%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 37.0 3.70e-01 94.0% 61.8%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.59 49.0 3.63e-01 92.5% 35.2%
1nbwA04 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 47.0 3.87e-01 92.5% 70.5%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 45.0 4.06e-01 86.6% 59.4%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.58 48.0 4.47e-01 92.5% 80.0%
3ibyD02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 47.0 4.37e-01 91.0% 72.6%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 39.0 3.81e-01 73.1% 66.7%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 48.0 3.90e-01 91.0% 78.0%
6oi7A01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.56 43.0 3.27e-01 91.0% 43.9%
3gg4A02 1.20.58.2240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 50.0 3.63e-01 98.5% 65.3%
4nt1A00 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.55 48.0 3.43e-01 97.0% 58.0%
6fahC01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.53 37.0 3.14e-01 74.6% 73.9%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 36.0 3.62e-01 70.1% 100.0%
2fx0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 36.0 2.97e-01 77.6% 46.2%
3mpiA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.50 37.0 3.10e-01 80.6% 80.2%
1ivhA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.50 35.0 2.92e-01 74.6% 74.6%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4320306 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.75 54.0 4.45e-01 74.6% 45.5%
4335871 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.75 53.0 4.48e-01 74.6% 45.5%
4654983 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.75 52.0 4.41e-01 74.6% 44.5%
4300676 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.72 49.0 4.13e-01 74.6% 42.7%
4110549 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.72 49.0 4.20e-01 73.1% 43.6%
4263341 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.72 51.0 4.25e-01 74.6% 47.8%
4385365 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.72 47.0 3.96e-01 79.1% 40.9%
4175087 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.71 49.0 4.13e-01 74.6% 43.6%
3741234 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.71 50.0 4.19e-01 74.6% 44.3%
3954373 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.71 54.0 3.50e-01 82.1% 26.8%
3839273 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.70 49.0 4.19e-01 74.6% 44.5%
4206524 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.70 49.0 4.19e-01 74.6% 45.5%
4079591 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.70 49.0 4.18e-01 74.6% 45.5%
4429833 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.69 48.0 4.10e-01 74.6% 44.5%
3987846 2002.1.1.50 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › F_bP_aldolase 0.69 56.0 3.68e-01 91.0% 90.1%
3972373 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 51.0 3.73e-01 79.1% 30.9%
4945888 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.68 52.0 4.88e-01 80.6% 72.5%
3987839 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.68 49.0 4.35e-01 74.6% 56.8%
4429194 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.67 49.0 4.10e-01 80.6% 46.4%
3934928 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 47.0 4.12e-01 74.6% 56.8%
4424778 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.64 50.0 4.17e-01 82.1% 52.7%
3588296 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.64 55.0 4.38e-01 94.0% 94.6%
4273807 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.64 49.0 2.93e-01 80.6% 13.2%
4147453 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.64 50.0 4.14e-01 82.1% 52.7%
4359654 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.64 50.0 4.13e-01 82.1% 52.7%
3782284 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 54.0 3.92e-01 100.0% 66.7%
4555586 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.63 49.0 4.18e-01 82.1% 55.2%
4057547 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.63 50.0 4.12e-01 82.1% 52.7%
4392311 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.63 32.0 3.80e-01 70.1% 68.9%
4043484 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.63 49.0 4.09e-01 82.1% 52.7%
4231284 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.62 48.0 4.05e-01 82.1% 52.7%
3932692 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.62 47.0 4.25e-01 86.6% 60.0%
5027469 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.62 48.0 2.85e-01 82.1% 12.2%
2819342 3788.1.1.1 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › VPR 0.60 45.0 4.58e-01 95.5% 82.8%
2388286 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.59 41.0 4.04e-01 88.1% 68.1%
5005807 2003.1.1.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH 0.58 48.0 3.31e-01 95.5% 27.2%
3408658 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.57 35.0 3.62e-01 74.6% 65.0%
3223489 223.2.1.7 a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.57 47.0 3.76e-01 89.6% 46.9%
3825757 101.35.1.23 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.57 37.0 3.77e-01 82.1% 67.7%
5030241 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.57 36.0 3.74e-01 74.6% 70.0%
4954319 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.57 48.0 3.30e-01 94.0% 38.6%
4956322 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.57 49.0 3.44e-01 97.0% 94.0%
3518918 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.56 44.0 4.28e-01 89.6% 78.7%
1180363 4995.1.1.1 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.55 37.0 3.71e-01 74.6% 66.2%
3720580 611.9.1.0 alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain 0.51 47.0 3.76e-01 100.0% 95.3%
D2 high residues 123-201
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14163.12 best SieB 59.7 3.30e-16 100.0% 46.9%
CATH (64)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 60.0 5.88e-01 83.5% 98.8%
4c9yA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.76 53.0 4.53e-01 72.2% 96.7%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 66.0 5.13e-01 94.9% 51.8%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.76 68.0 5.75e-01 98.7% 97.6%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 66.0 6.28e-01 96.2% 94.6%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 66.0 5.87e-01 97.5% 80.9%
2f2eA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 66.0 6.32e-01 97.5% 95.6%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 62.0 5.05e-01 89.9% 57.9%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 61.0 4.99e-01 91.1% 56.8%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 59.0 5.64e-01 87.3% 94.6%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 51.0 4.97e-01 72.2% 88.2%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 63.0 5.99e-01 94.9% 89.4%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 5.13e-01 70.9% 94.7%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 64.0 5.92e-01 98.7% 91.1%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 5.23e-01 77.2% 89.4%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 61.0 5.99e-01 92.4% 98.8%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 5.07e-01 77.2% 91.2%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 58.0 5.62e-01 87.3% 95.4%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 52.0 5.11e-01 75.9% 97.6%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 5.31e-01 78.5% 97.6%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 61.0 5.67e-01 93.7% 90.0%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 54.0 5.45e-01 79.7% 85.0%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 4.90e-01 78.5% 75.2%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 62.0 5.70e-01 97.5% 82.7%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 56.0 5.41e-01 86.1% 91.1%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 54.0 5.43e-01 82.3% 98.8%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 63.0 6.08e-01 100.0% 97.8%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 62.0 5.92e-01 98.7% 97.8%
2jtvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 5.84e-01 91.1% 100.0%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 5.01e-01 92.4% 66.7%
5dcaA11 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 4.71e-01 79.7% 93.3%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 5.28e-01 79.7% 89.7%
2jscB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 57.0 5.77e-01 91.1% 100.0%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 4.91e-01 75.9% 91.6%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 60.0 5.73e-01 97.5% 100.0%
1bbyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 5.18e-01 75.9% 92.8%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 53.0 5.20e-01 83.5% 94.0%
4izzB03 1.10.10.1670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain 0.66 48.0 4.22e-01 75.9% 100.0%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.16e-01 88.6% 81.7%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.78e-01 83.5% 87.8%
2i4lA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.64 45.0 2.98e-01 74.7% 73.2%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 5.18e-01 98.7% 95.7%
1httA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.61 43.0 3.03e-01 74.7% 79.4%
4yhxA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 49.0 4.18e-01 93.7% 66.0%
2xzn800 3.30.63.20 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › 0.59 46.0 4.40e-01 87.3% 71.0%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.59 48.0 4.86e-01 89.9% 97.5%
8begA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 44.0 3.53e-01 81.0% 56.2%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.58 40.0 3.64e-01 72.2% 75.0%
2af6A01 3.30.70.3180 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 3.34e-01 70.9% 90.8%
1whrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.54 46.0 4.08e-01 100.0% 75.0%
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.54 41.0 3.93e-01 87.3% 89.0%
3rayA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.53 42.0 3.37e-01 87.3% 61.0%
8begA03 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.26e-01 81.0% 55.0%
8amzP01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 42.0 2.73e-01 88.6% 20.5%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.52 37.0 3.38e-01 74.7% 76.9%
1xjhA00 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.52 35.0 3.87e-01 81.0% 88.7%
3od1A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 44.0 2.99e-01 97.5% 35.3%
1g6sA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.51 39.0 2.96e-01 83.5% 95.6%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.51 33.0 3.70e-01 89.9% 91.2%
2grvA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 36.0 2.85e-01 74.7% 43.1%
1z7mC00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 39.0 2.68e-01 84.8% 33.1%
1xocA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 35.0 2.87e-01 73.4% 43.9%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.50 40.0 2.69e-01 86.1% 43.6%
2q4aA00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.50 39.0 2.70e-01 88.6% 69.2%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4004341 101.1.2.775 alpha arrays › HTH › HTH › winged helix domain › SieB 0.94 91.0 8.86e-01 100.0% 92.9%
3666925 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.80 70.0 5.98e-01 94.9% 80.0%
3282985 101.1.2.508 alpha arrays › HTH › HTH › winged helix domain › PF25872 0.80 69.0 6.75e-01 92.4% 97.6%
4998856 101.1.2.785 alpha arrays › HTH › HTH › winged helix domain › HTH_13 0.80 74.0 7.28e-01 100.0% 100.0%
3273469 101.1.2.281 alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.80 67.0 6.67e-01 91.1% 98.8%
3301908 101.1.2.281 alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.80 68.0 6.38e-01 92.4% 94.7%
5079941 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 57.0 5.83e-01 74.7% 90.7%
3285981 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 65.0 6.37e-01 88.6% 95.3%
3380214 207.1.1.230 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › WHD_ROQ1 0.78 69.0 4.40e-01 97.5% 31.4%
3199434 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 66.0 6.44e-01 92.4% 98.8%
5010522 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 62.0 5.99e-01 87.3% 95.5%
4958659 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.77 69.0 6.64e-01 98.7% 97.8%
3282605 101.1.2.508 alpha arrays › HTH › HTH › winged helix domain › PF25872 0.76 64.0 6.38e-01 89.9% 100.0%
4965712 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.76 65.0 6.11e-01 92.4% 94.7%
4029108 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 67.0 6.04e-01 97.5% 82.6%
4961047 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.76 69.0 6.79e-01 100.0% 100.0%
5077079 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 62.0 5.50e-01 89.9% 98.3%
3726126 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 68.0 5.27e-01 98.7% 78.8%
3205602 101.1.2.281 alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.75 64.0 6.11e-01 92.4% 94.4%
5077205 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 61.0 5.72e-01 87.3% 98.9%
4968041 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.75 62.0 5.05e-01 89.9% 91.7%
3955027 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 66.0 6.22e-01 97.5% 86.3%
5024927 101.1.2.275 alpha arrays › HTH › HTH › winged helix domain › DUF1495 0.75 66.0 6.05e-01 98.7% 95.2%
3165321 101.1.2.280 alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.74 56.0 5.39e-01 79.7% 85.6%
3676148 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.74 65.0 5.60e-01 97.5% 93.6%
3946321 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 57.0 6.14e-01 87.3% 100.0%
3441807 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.74 55.0 5.36e-01 78.5% 100.0%
3919567 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.74 54.0 5.11e-01 77.2% 89.5%
167429 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.74 61.0 4.99e-01 91.1% 56.8%
3249236 4207.1.2.93 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › RNA12 0.73 61.0 4.40e-01 91.1% 45.0%
4025070 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.73 66.0 5.72e-01 100.0% 81.7%
4945998 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 53.0 5.43e-01 75.9% 90.7%
4992272 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 59.0 5.06e-01 86.1% 78.3%
5067817 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 58.0 5.22e-01 87.3% 71.8%
5047951 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 65.0 4.89e-01 100.0% 76.8%
5026706 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 58.0 4.89e-01 86.1% 69.2%
3737673 101.1.2.311 alpha arrays › HTH › HTH › winged helix domain › RNA12 0.72 60.0 5.60e-01 92.4% 96.0%
3942501 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 60.0 5.79e-01 92.4% 100.0%
3728829 101.1.2.359 alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.72 60.0 5.35e-01 91.1% 97.3%
4982733 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 59.0 5.63e-01 88.6% 92.2%
3305572 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.72 60.0 3.93e-01 92.4% 92.2%
5042411 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.72 59.0 5.75e-01 88.6% 94.1%
4992965 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 56.0 4.77e-01 83.5% 59.2%
3630104 192.24.1.6 alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.71 56.0 3.54e-01 83.5% 22.9%
5041641 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.71 56.0 5.74e-01 83.5% 100.0%
4310372 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.71 58.0 4.39e-01 88.6% 51.9%
3739375 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.71 58.0 5.01e-01 89.9% 76.8%
5075009 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 54.0 5.10e-01 81.0% 87.4%
3287283 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 62.0 5.59e-01 98.7% 80.9%
5069873 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 58.0 5.73e-01 89.9% 96.5%
3979431 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 58.0 4.67e-01 88.6% 58.0%
3466949 101.1.2.524 alpha arrays › HTH › HTH › winged helix domain › DUF7625 0.70 50.0 4.34e-01 73.4% 63.5%
3434870 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.70 53.0 5.30e-01 79.7% 100.0%
3502634 101.1.2.503 alpha arrays › HTH › HTH › winged helix domain › PF25875 0.70 49.0 5.30e-01 72.2% 100.0%
4937876 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 56.0 4.79e-01 86.1% 68.8%
4250998 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.70 56.0 5.31e-01 87.3% 97.9%
3508627 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 50.0 5.27e-01 74.7% 94.3%
5010374 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 49.0 4.62e-01 73.4% 84.2%
4399101 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.69 54.0 4.82e-01 83.5% 73.6%
5006536 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.69 56.0 5.44e-01 88.6% 87.8%
5001357 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 5.26e-01 89.9% 91.0%
4937983 101.1.2.139 alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.68 51.0 4.60e-01 78.5% 67.6%
4971296 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 56.0 5.58e-01 88.6% 95.0%
4651301 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.68 57.0 5.07e-01 92.4% 80.0%
3951258 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 54.0 4.33e-01 84.8% 56.0%
4979350 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 4.69e-01 86.1% 83.3%
3407169 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.68 56.0 5.10e-01 89.9% 89.5%
4944350 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 56.0 5.58e-01 91.1% 100.0%
3405902 101.1.2.177 alpha arrays › HTH › HTH › winged helix domain › MARF1_LOTUS 0.68 56.0 5.62e-01 91.1% 97.5%
3315108 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.67 56.0 5.03e-01 91.1% 77.3%
3585702 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.66 50.0 4.93e-01 82.3% 89.4%
4030596 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 45.0 4.40e-01 70.9% 85.9%
5053763 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.40e-01 96.2% 93.3%
5001113 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 5.13e-01 88.6% 88.9%
3689581 101.1.2.517 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.65 58.0 3.47e-01 97.5% 88.3%
5012700 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.64 53.0 5.25e-01 93.7% 94.1%
None 0.64 54.0 5.18e-01 97.5% 94.7%
3223457 101.1.2.661 alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD 0.64 56.0 3.84e-01 97.5% 68.6%
None 0.63 55.0 5.33e-01 100.0% 94.4%
3300188 101.1.2.496 alpha arrays › HTH › HTH › winged helix domain › WH_eIF2D 0.62 47.0 4.41e-01 83.5% 94.0%
3651024 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.61 53.0 4.77e-01 96.2% 78.2%