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ON470620.1__URC10456.1__X__00005

Bact-Vir

ON470620.1__URC10456.1__X__00005

Identity

Accession:
ON470620 ↗
Kingdom:
phage

Quality

94.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Escherichia_phage_vB_EcoM-813R9

TaxID: 2946098

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-189
PDB
Domain cluster: rep: IMGVR_UViG_3300009647_000341-3300009647-Ga0123326_100472211__D4-123
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01510.31 best Amidase_2 103.8 1.20e-29 93.1% 94.6%
D2 high residues 197-274
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bolA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.84 78.0 7.74e-01 100.0% 95.0%
3bkhA01 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.76 66.0 6.42e-01 93.6% 90.7%
4c2dA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.75 64.0 6.24e-01 92.3% 90.6%
3gwlA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.55 40.0 3.67e-01 78.2% 94.3%
1pu6A01 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.53 43.0 4.10e-01 91.0% 81.9%
3hi0A02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.53 40.0 3.11e-01 82.1% 56.3%
1jr8A00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.53 39.0 3.61e-01 80.8% 96.2%
3k53A02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 32.0 2.98e-01 70.5% 49.0%
2hpsA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 44.0 3.39e-01 98.7% 92.4%
1fafA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.50 34.0 3.45e-01 70.5% 70.9%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1900588 144.1.1.0 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.86 81.0 7.99e-01 100.0% 96.3%
3987122 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.84 79.0 7.89e-01 100.0% 97.5%
1086899 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.84 78.0 7.81e-01 100.0% 97.4%
3275963 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.74 62.0 5.92e-01 91.0% 94.4%
4029785 2486.1.1.1 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 0.64 56.0 3.82e-01 100.0% 80.0%
3165359 105.1.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.60 43.0 4.05e-01 76.9% 67.0%
3781056 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.58 39.0 3.27e-01 100.0% 37.9%
3246610 109.26.1.6 ↗ alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › TPR_NUP160_120_M 0.57 41.0 2.62e-01 76.9% 30.7%
3223508 601.42.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Helical bundle in ROQ domain › Helical bundle in ROQ domain 0.57 42.0 3.36e-01 79.5% 87.9%
3393599 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.55 47.0 4.47e-01 98.7% 84.2%
3732638 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.54 45.0 3.23e-01 94.9% 36.9%
3844796 108.1.1.104 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_8 0.54 39.0 2.95e-01 78.2% 28.4%
3845132 109.4.1.1608 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Maestro_2, HEAT_MROH2B_1st 0.54 41.0 2.40e-01 82.1% 16.8%
3202676 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.53 34.0 2.62e-01 73.1% 26.8%
3768142 109.4.1.920 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Maestro_2 0.53 38.0 2.25e-01 75.6% 23.7%
3704696 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.52 34.0 3.25e-01 82.1% 57.8%
3595132 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.51 33.0 2.54e-01 73.1% 27.6%
3867685 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 44.0 3.54e-01 100.0% 66.7%
3592510 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.51 33.0 2.50e-01 73.1% 26.2%
3611875 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.51 33.0 2.50e-01 74.4% 26.2%
3568345 108.1.1.18 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_2 0.51 42.0 3.52e-01 91.0% 77.8%
3441899 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.51 39.0 3.96e-01 92.3% 85.0%
3692 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.50 34.0 3.45e-01 70.5% 70.9%