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ON524861.1__WAB56828.1__X__00134

Bact-Vir

ON524861.1__WAB56828.1__X__00134

Identity

Accession:
ON524861 ↗
Kingdom:
phage

Quality

71.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vandenendeviridae› Nankokuvirus› Pseudomonas_phage_vB_PaeM_RP15

TaxID: 2951337

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-105
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 33.0 4.46e-01 81.4% 100.0%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 39.0 4.77e-01 84.3% 96.8%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 41.0 4.64e-01 88.2% 83.3%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 43.0 4.64e-01 91.2% 82.1%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 38.0 4.60e-01 84.3% 96.7%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 39.0 4.64e-01 86.3% 93.9%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 37.0 3.83e-01 84.3% 59.2%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 37.0 4.64e-01 83.3% 98.4%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 37.0 4.38e-01 84.3% 85.7%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 31.0 4.02e-01 79.4% 87.3%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 44.0 4.73e-01 98.0% 88.4%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 39.0 4.66e-01 89.2% 100.0%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 26.0 3.07e-01 73.5% 53.4%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 36.0 4.39e-01 82.4% 100.0%
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 29.0 3.69e-01 82.4% 77.6%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 34.0 4.25e-01 81.4% 100.0%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 36.0 4.36e-01 83.3% 95.2%
1dkiC01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.61 44.0 3.58e-01 100.0% 39.7%
3kalB05 3.30.1490.50 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain 0.61 33.0 4.03e-01 100.0% 88.1%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 38.0 4.48e-01 84.3% 95.5%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 36.0 4.35e-01 83.3% 100.0%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 4.60e-01 98.0% 98.6%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 34.0 4.07e-01 91.2% 86.4%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 37.0 4.37e-01 84.3% 98.4%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.59 33.0 3.94e-01 81.4% 83.3%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 35.0 4.24e-01 84.3% 98.3%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 30.0 3.84e-01 83.3% 92.5%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 37.0 4.38e-01 81.4% 100.0%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 31.0 3.91e-01 86.3% 96.4%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 33.0 4.05e-01 83.3% 100.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 31.0 3.88e-01 81.4% 90.3%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 4.21e-01 94.1% 92.2%
6zq3A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 47.0 3.73e-01 100.0% 45.7%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 34.0 3.96e-01 95.1% 91.2%
6dgiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.54 31.0 3.74e-01 100.0% 86.8%
5yprA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 4.37e-01 85.3% 98.8%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 34.0 4.00e-01 78.4% 100.0%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.53 31.0 3.55e-01 85.3% 79.5%
1jqpA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 45.0 3.52e-01 100.0% 45.2%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.51 41.0 3.27e-01 87.3% 53.4%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 35.0 3.64e-01 73.5% 76.0%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3304602 4.1.1.427 ↗ beta barrels › SH3 › SH3 › SH3 › F-box 0.67 38.0 3.98e-01 99.0% 60.0%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.66 34.0 4.53e-01 84.3% 100.0%
3372822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 43.0 4.80e-01 98.0% 88.0%
3572393 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.66 43.0 4.92e-01 97.1% 95.7%
3930456 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 38.0 4.58e-01 90.2% 90.8%
3556601 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.65 40.0 4.78e-01 97.1% 96.9%
3554995 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 39.0 4.48e-01 85.3% 85.7%
3200493 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 31.0 3.98e-01 80.4% 81.8%
3995675 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 38.0 4.72e-01 83.3% 100.0%
3636812 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 38.0 4.58e-01 85.3% 92.3%
3579728 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 39.0 4.57e-01 84.3% 88.6%
3993250 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.64 36.0 4.53e-01 89.2% 100.0%
3373330 4.1.1.337 ↗ beta barrels › SH3 › SH3 › SH3 › CSD_RNase_II 0.64 36.0 4.12e-01 94.1% 74.7%
3573262 4.1.1.91 ↗ beta barrels › SH3 › SH3 › SH3 › hSH3 0.64 38.0 4.05e-01 85.3% 66.7%
3776390 4.1.1.91 ↗ beta barrels › SH3 › SH3 › SH3 › hSH3 0.64 38.0 3.71e-01 84.3% 52.2%
4218142 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.64 38.0 3.89e-01 100.0% 60.0%
3702915 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 37.0 4.53e-01 83.3% 96.7%
3924338 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 37.0 4.28e-01 83.3% 82.9%
3498145 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 37.0 4.47e-01 84.3% 92.2%
3231177 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.63 33.0 4.28e-01 92.2% 100.0%
1263713 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.63 34.0 4.37e-01 91.2% 100.0%
3211367 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 39.0 4.13e-01 86.3% 70.0%
3502290 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 36.0 4.50e-01 97.1% 96.7%
3554293 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 38.0 4.54e-01 88.2% 93.8%
3879164 4.1.1.91 ↗ beta barrels › SH3 › SH3 › SH3 › hSH3 0.63 38.0 4.25e-01 83.3% 80.0%
3494765 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.63 37.0 2.92e-01 84.3% 26.8%
3533318 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.63 31.0 4.11e-01 80.4% 94.0%
3810217 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 32.0 4.28e-01 83.3% 100.0%
3491137 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 37.0 4.50e-01 84.3% 98.3%
3907870 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 37.0 4.14e-01 85.3% 75.9%
3900733 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 38.0 4.37e-01 83.3% 87.1%
3415045 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 37.0 4.25e-01 84.3% 84.3%
4014906 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 30.0 3.37e-01 80.4% 56.2%
3899828 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 37.0 4.09e-01 85.3% 75.0%
3622389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 37.0 4.34e-01 97.1% 90.8%
3479350 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 36.0 3.94e-01 84.3% 69.4%
3256431 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.62 32.0 3.59e-01 90.2% 62.5%
3496355 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 35.0 4.36e-01 80.4% 100.0%
3487936 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 36.0 4.21e-01 84.3% 84.3%
3621642 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 36.0 4.03e-01 84.3% 73.8%
3413864 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 38.0 3.25e-01 83.3% 37.6%
3186993 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 41.0 4.09e-01 84.3% 65.7%
3397846 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 33.0 4.17e-01 94.1% 94.5%
3523979 604.12.1.118 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF4537 0.61 32.0 3.94e-01 84.3% 83.3%
3626531 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 38.0 4.07e-01 88.2% 71.1%
3243143 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 38.0 4.49e-01 94.1% 98.5%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.61 38.0 3.00e-01 94.1% 30.0%
3514453 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 37.0 4.20e-01 85.3% 82.7%
3513923 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 36.0 4.08e-01 85.3% 80.0%
3999508 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 39.0 4.45e-01 90.2% 94.3%
4038705 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.60 37.0 4.49e-01 82.4% 98.5%
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 29.0 3.82e-01 78.4% 85.5%
3510676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 39.0 4.01e-01 100.0% 69.5%
3868320 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.60 33.0 3.94e-01 86.3% 81.5%
3936726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 33.0 4.15e-01 90.2% 100.0%
3855972 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.59 34.0 4.01e-01 87.3% 86.2%
3929260 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 33.0 4.17e-01 86.3% 98.2%
3247995 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.59 34.0 3.90e-01 92.2% 80.0%
3999846 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 37.0 4.12e-01 84.3% 84.0%
3406633 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 41.0 4.19e-01 84.3% 74.0%
1290375 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.58 38.0 4.42e-01 82.4% 100.0%
4030387 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.57 53.0 3.57e-01 100.0% 37.5%
3643302 219.1.1.78 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Guanylate_cyc_2 0.56 49.0 3.82e-01 100.0% 44.5%
3475807 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 39.0 4.31e-01 87.3% 93.8%
3592332 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 41.0 4.14e-01 100.0% 77.1%
3215500 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 30.0 3.90e-01 89.2% 100.0%
3715828 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.54 39.0 4.26e-01 84.3% 95.0%
3481577 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.53 46.0 3.52e-01 100.0% 41.2%
3594081 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 4.00e-01 82.4% 95.0%
3995290 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.51 45.0 4.46e-01 99.0% 93.6%
3715774 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 44.0 3.92e-01 100.0% 95.5%
3500406 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.50 43.0 3.04e-01 99.0% 37.2%