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ON526969.1__USH44559.1__SEA_CASSITA_106__00105

Bact-Vir

ON526969.1__USH44559.1__SEA_CASSITA_106__00105

Identity

Accession:
ON526969 ↗
Kingdom:
phage

Quality

89.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-55
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 5.36e-01 100.0% 100.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 5.09e-01 98.1% 92.4%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 5.07e-01 98.1% 90.9%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 43.0 3.83e-01 73.6% 62.0%
1ffvC03 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.62 52.0 4.15e-01 98.1% 54.4%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.61 53.0 4.46e-01 100.0% 81.7%
3i7dA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 50.0 3.62e-01 96.2% 51.6%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 4.03e-01 77.4% 79.4%
4zohB02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.60 49.0 4.03e-01 98.1% 56.9%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.60 41.0 3.59e-01 73.6% 60.2%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 51.0 4.00e-01 100.0% 75.8%
1t3qC02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.60 49.0 3.95e-01 100.0% 83.1%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.59 44.0 3.77e-01 84.9% 59.4%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.59 43.0 4.27e-01 77.4% 75.4%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 49.0 4.23e-01 100.0% 80.2%
4yarA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 49.0 3.83e-01 98.1% 68.3%
2w3sA04 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 47.0 3.89e-01 100.0% 85.1%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.37e-01 81.1% 65.3%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.58 40.0 3.97e-01 73.6% 100.0%
2e1qC04 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 48.0 3.75e-01 98.1% 46.2%
1yc5A02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.58 46.0 4.15e-01 98.1% 72.6%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 48.0 4.05e-01 98.1% 80.0%
2r7kA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 44.0 4.33e-01 94.3% 91.8%
2kloA00 1.10.10.1420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain 0.57 43.0 3.30e-01 86.8% 59.4%
1m2gA02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.56 45.0 3.94e-01 98.1% 64.5%
2n17A00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.56 43.0 4.29e-01 100.0% 83.9%
1s67L00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 38.0 3.00e-01 71.7% 46.2%
2okmA00 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 3.50e-01 100.0% 69.2%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.55 47.0 3.36e-01 100.0% 49.4%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.55 46.0 3.55e-01 100.0% 83.3%
4as2A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 43.0 2.93e-01 90.6% 29.5%
1iw4A00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.53 46.0 4.59e-01 100.0% 96.4%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 41.0 3.00e-01 90.6% 81.1%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.53 44.0 3.40e-01 100.0% 66.7%
1z5hA03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 3.95e-01 96.2% 90.4%
1hgeA01 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.53 43.0 3.02e-01 100.0% 62.0%
2wcyA02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.53 43.0 3.93e-01 98.1% 92.5%
1oeyA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 42.0 3.82e-01 98.1% 92.7%
1n6uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.53e-01 96.2% 69.8%
1jelP00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.52 44.0 3.85e-01 100.0% 72.9%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 45.0 3.51e-01 98.1% 91.2%
4f23A02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.52 41.0 2.89e-01 100.0% 60.3%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.52 38.0 3.22e-01 88.7% 51.4%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 41.0 2.65e-01 88.7% 73.7%
3htkC02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 34.0 3.46e-01 71.7% 85.2%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.22e-01 98.1% 85.5%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3387119 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.75 68.0 5.61e-01 100.0% 72.2%
4010681 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.73 66.0 5.39e-01 100.0% 69.5%
5024132 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.72 63.0 4.93e-01 100.0% 47.8%
5047239 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 59.0 5.58e-01 98.1% 100.0%
4152972 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.67 45.0 3.07e-01 75.5% 18.5%
5066729 632.3.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.66 55.0 4.71e-01 98.1% 60.0%
4177272 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.65 46.0 3.10e-01 75.5% 20.0%
1263519 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.65 53.0 5.12e-01 96.2% 98.4%
7151 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.64 55.0 3.87e-01 100.0% 80.2%
135648 4.1.1.142 beta barrels › SH3 › SH3 › SH3 › Hfq_1 0.64 54.0 5.12e-01 98.1% 95.4%
5059788 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.63 52.0 3.83e-01 100.0% 84.2%
4961681 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.62 52.0 3.78e-01 100.0% 83.5%
4982667 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.62 51.0 3.73e-01 100.0% 82.9%
5076492 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.62 51.0 3.63e-01 100.0% 76.8%
5082395 3110.1.1.0 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.61 43.0 2.75e-01 77.4% 14.1%
1172458 379.1.1.4 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_3 0.61 43.0 4.30e-01 77.4% 73.6%
4007558 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.61 51.0 3.69e-01 100.0% 84.1%
1734642 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.61 50.0 3.67e-01 100.0% 80.6%
4341479 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.60 42.0 2.85e-01 75.5% 18.6%
7154 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.60 48.0 3.55e-01 100.0% 80.7%
3257775 4988.1.1.0 a+b two layers › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain 0.60 46.0 4.41e-01 100.0% 73.8%
3290403 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.60 49.0 3.49e-01 100.0% 84.1%
3328074 10.12.1.73 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DIOX_N 0.59 50.0 3.20e-01 100.0% 27.0%
3932124 5050.1.1.32 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.59 44.0 2.91e-01 84.9% 64.4%
6675 274.1.1.10 a+b two layers › Pili subunits › Pili subunits › Pili subunits › PilS 0.58 47.0 3.57e-01 100.0% 36.5%
5022231 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 44.0 3.39e-01 83.0% 38.4%
4383358 10.13.1.0 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.57 50.0 2.86e-01 100.0% 14.9%
3843269 180.1.1.6 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › FIT 0.57 47.0 3.11e-01 100.0% 76.1%
3470130 219.1.1.81 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY-3_4_CD 0.56 47.0 2.98e-01 98.1% 43.8%
5046988 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.55 38.0 3.25e-01 73.6% 94.7%
3936863 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 40.0 2.64e-01 81.1% 40.4%
3512946 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 40.0 2.90e-01 83.0% 65.1%
4963717 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.53 43.0 3.80e-01 100.0% 71.1%
4403519 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 36.0 2.61e-01 75.5% 22.4%
4234915 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.53 43.0 3.51e-01 96.2% 60.9%
4934443 102.2.1.3 alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.53 36.0 2.79e-01 79.2% 27.9%
4546356 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 39.0 3.41e-01 83.0% 78.8%
4478999 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.53 35.0 2.57e-01 75.5% 22.0%
5055801 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.52 43.0 4.32e-01 90.6% 88.7%
4945808 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.52 37.0 2.56e-01 81.1% 83.8%
4978263 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.52 44.0 3.18e-01 100.0% 48.5%
4557742 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 45.0 3.51e-01 100.0% 78.3%
3248822 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.52 37.0 2.62e-01 77.4% 97.4%
4221024 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 35.0 2.44e-01 75.5% 18.5%
4009784 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.52 43.0 3.74e-01 100.0% 71.1%
4279225 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.52 43.0 3.42e-01 98.1% 59.2%
4156970 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.52 42.0 3.38e-01 96.2% 58.3%
5042462 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.52 35.0 2.59e-01 73.6% 23.0%
1871771 1.1.5.43 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MrkH_YcgR_like 0.52 41.0 3.43e-01 98.1% 55.9%
3781851 5050.1.1.32 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.52 42.0 2.79e-01 96.2% 71.0%
3979258 322.1.1.1 a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.52 41.0 3.67e-01 100.0% 71.1%
4646072 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 34.0 2.52e-01 71.7% 22.9%
4985036 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 36.0 2.59e-01 75.5% 23.5%
5054122 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 42.0 2.93e-01 88.7% 42.5%
4456198 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 35.0 2.50e-01 75.5% 21.1%
5039984 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 34.0 2.54e-01 73.6% 23.0%
2389702 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.51 42.0 3.41e-01 98.1% 60.5%
4241167 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.51 34.0 2.51e-01 100.0% 22.9%
4539244 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.51 41.0 3.47e-01 98.1% 61.0%
4341216 180.1.1.0 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase 0.51 42.0 2.74e-01 100.0% 40.8%
2392884 227.1.1.14 a+b two layers › DNA clamp › DNA clamp › DNA clamp › gp45-slide_C 0.50 39.0 3.12e-01 88.7% 75.8%