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ON528720.1__URY10904.1__X__00002

Bact-Vir

ON528720.1__URY10904.1__X__00002

Identity

Accession:
ON528720 ↗
Kingdom:
phage

Quality

67.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Teetrevirus› Shigella_phage_ESh7

TaxID: 2950785

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-78
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gccA00 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.91 81.0 6.64e-01 100.0% 66.7%
7wq5A01 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.90 79.0 6.72e-01 100.0% 72.4%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.87 77.0 6.10e-01 100.0% 64.8%
1g2dC03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.75 52.0 5.56e-01 83.3% 100.0%
4o32C00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.66 50.0 4.07e-01 100.0% 92.3%
6g85A01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 45.0 3.03e-01 72.2% 62.1%
3wisA00 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.62 51.0 3.30e-01 100.0% 52.2%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 51.0 3.72e-01 100.0% 36.1%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 40.0 2.71e-01 97.2% 17.6%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.59 43.0 3.53e-01 83.3% 88.2%
2l6lA02 3.10.660.10 Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger 0.58 43.0 3.81e-01 94.4% 66.2%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.57 43.0 3.78e-01 83.3% 74.5%
2jugA01 1.10.10.1830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain 0.56 39.0 3.40e-01 72.2% 74.5%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 2.98e-01 100.0% 31.5%
4fhdA02 3.80.30.30 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › 0.55 42.0 2.53e-01 100.0% 13.2%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.54 37.0 3.42e-01 80.6% 100.0%
3g1pA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 41.0 2.52e-01 91.7% 82.7%
5ly3A02 3.30.420.570 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.52 42.0 2.63e-01 94.4% 76.8%
2zxqA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 40.0 2.45e-01 100.0% 33.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3813458 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.93 84.0 7.43e-01 100.0% 82.0%
3331331 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.92 82.0 5.82e-01 100.0% 39.0%
3380188 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.92 82.0 7.06e-01 100.0% 74.5%
3671921 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.92 83.0 7.08e-01 100.0% 72.7%
3827127 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.91 81.0 5.86e-01 100.0% 41.1%
3965886 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.89 80.0 7.40e-01 100.0% 88.9%
3661849 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.86 76.0 6.26e-01 100.0% 63.5%
3721997 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.86 75.0 6.76e-01 100.0% 72.0%
3425673 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.83 70.0 6.40e-01 100.0% 82.0%
4282578 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.81 71.0 5.44e-01 100.0% 46.3%
3920872 386.1.1.238 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_6 0.81 57.0 4.92e-01 83.3% 49.1%
4826872 2010.1.1.4 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › FakA-like_C 0.81 67.0 4.92e-01 100.0% 44.7%
5079654 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.79 62.0 4.88e-01 91.7% 53.8%
3809346 902.1.1.0 ↗ few secondary structure elements › Amb V allergen › Amb V allergen › Amb V allergen 0.77 60.0 5.89e-01 88.9% 95.0%
3185843 386.1.1.317 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_fungi 0.76 61.0 6.22e-01 97.2% 100.0%
3801649 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.74 57.0 5.28e-01 83.3% 75.6%
5007757 4012.1.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.68 50.0 5.09e-01 80.6% 82.9%
4329564 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.68 50.0 4.00e-01 80.6% 38.7%
5010770 2002.3.1.3 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_57 0.66 49.0 2.75e-01 83.3% 6.8%
3666672 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 54.0 3.93e-01 100.0% 33.6%
3224950 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 3.52e-01 100.0% 41.0%
5023957 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.54 39.0 3.09e-01 100.0% 36.3%