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ON528735.1__URY13383.1__X__00229

Bact-Vir

ON528735.1__URY13383.1__X__00229

Identity

Accession:
ON528735 ↗
Kingdom:
phage

Quality

80.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tequatrovirus› Shigella_phage_ESh25

TaxID: 2950771

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-75
PDB
Domain cluster: rep: NC_055716.1__YP_010089837.1__KNT60_gp257__00257__D8-76
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 49.0 5.70e-01 76.8% 100.0%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 56.0 5.71e-01 89.9% 89.4%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 56.0 5.71e-01 89.9% 90.9%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 4.68e-01 73.9% 88.7%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 5.15e-01 85.5% 78.3%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 5.57e-01 87.0% 98.5%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 4.46e-01 71.0% 85.5%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 48.0 4.01e-01 78.3% 77.8%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 5.42e-01 91.3% 91.9%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 5.00e-01 87.0% 95.1%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 4.97e-01 73.9% 91.4%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 5.43e-01 89.9% 95.6%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 5.48e-01 89.9% 100.0%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 5.25e-01 91.3% 95.9%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 56.0 5.14e-01 100.0% 80.4%
5mkiH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 5.21e-01 89.9% 94.4%
1dkiC01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.64 56.0 4.08e-01 100.0% 42.3%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 4.88e-01 73.9% 96.4%
3bb7A01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.63 55.0 4.14e-01 98.6% 47.1%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 4.23e-01 81.2% 82.4%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.56e-01 89.9% 72.8%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 3.59e-01 79.7% 60.3%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 52.0 3.66e-01 100.0% 42.4%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.60 45.0 3.65e-01 100.0% 41.6%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 44.0 4.02e-01 79.7% 79.3%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 3.83e-01 78.3% 77.7%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.59 47.0 4.61e-01 88.4% 86.5%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 3.68e-01 79.7% 73.9%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.56e-01 82.6% 63.8%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.55e-01 78.3% 68.9%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.58 50.0 3.72e-01 100.0% 47.9%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 42.0 3.35e-01 100.0% 35.3%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 41.0 3.62e-01 76.8% 72.9%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.57 40.0 2.96e-01 75.4% 84.6%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.61e-01 81.2% 81.5%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.57e-01 85.5% 77.4%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 44.0 3.82e-01 89.9% 80.9%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 44.0 4.11e-01 95.7% 81.3%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.54 44.0 4.35e-01 98.6% 87.7%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.54 47.0 4.35e-01 100.0% 95.6%
4bq2D01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.53 45.0 3.36e-01 97.1% 79.9%
2yvsA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.53 47.0 4.03e-01 100.0% 83.3%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.23e-01 78.3% 82.1%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.52 38.0 3.98e-01 100.0% 94.9%
2kcqA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 41.0 3.33e-01 92.8% 92.8%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.51 38.0 4.00e-01 97.1% 91.8%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.60e-01 98.6% 82.3%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 37.0 2.87e-01 84.1% 82.2%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 61.0 6.28e-01 100.0% 95.4%
4499953 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 58.0 6.16e-01 100.0% 98.3%
4478186 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 46.0 5.54e-01 72.5% 100.0%
3971321 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.72 61.0 6.11e-01 91.3% 97.1%
4932434 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.72 50.0 5.06e-01 78.3% 72.9%
5029405 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.71 51.0 5.58e-01 84.1% 94.5%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.71 57.0 5.41e-01 89.9% 75.0%
4139090 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.70 50.0 5.48e-01 84.1% 94.5%
4485354 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.70 56.0 5.06e-01 87.0% 75.5%
4228570 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.83e-01 100.0% 96.2%
4813032 4.1.1.328 ↗ beta barrels › SH3 › SH3 › SH3 › Sm_like 0.68 47.0 4.49e-01 72.5% 82.3%
4400642 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.67 55.0 5.18e-01 97.1% 74.1%
3712219 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.66 52.0 5.35e-01 85.5% 92.3%
4009688 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.66 51.0 5.22e-01 97.1% 87.7%
3772638 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.66 51.0 4.92e-01 85.5% 80.2%
4165723 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.66 50.0 5.14e-01 95.7% 86.2%
4221708 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.65 53.0 5.37e-01 91.3% 92.9%
3978624 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.65 56.0 4.53e-01 100.0% 50.8%
3706998 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 49.0 5.23e-01 87.0% 93.3%
4259069 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 50.0 3.67e-01 100.0% 30.0%
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 44.0 4.77e-01 71.0% 89.1%
3596066 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 47.0 3.97e-01 81.2% 75.2%
3948255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.43e-01 95.7% 66.9%
4665407 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.63 42.0 4.74e-01 88.4% 96.0%
3592540 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 48.0 5.10e-01 88.4% 95.0%
3568384 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 45.0 3.73e-01 78.3% 69.2%
4406602 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.62 47.0 3.79e-01 92.8% 41.3%
3801791 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.64e-01 100.0% 87.7%
4075150 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.60 45.0 3.32e-01 92.8% 29.2%
3214168 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 44.0 3.65e-01 79.7% 65.6%
5083849 4027.1.1.2 ↗ beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › TOP6A-Spo11_Toprim 0.59 39.0 4.50e-01 89.9% 94.0%
3593363 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 44.0 3.75e-01 81.2% 70.0%
3263031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 5.01e-01 100.0% 98.5%
3463181 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.55e-01 100.0% 85.7%
933 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.58 42.0 3.55e-01 78.3% 68.9%
3803352 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.58 41.0 2.91e-01 73.9% 36.5%
3484822 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.58 48.0 4.65e-01 95.7% 83.7%
3326132 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.44e-01 97.1% 87.7%
4028452 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 42.0 3.49e-01 81.2% 75.6%
3518432 220.1.1.79 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C 0.57 41.0 3.54e-01 78.3% 76.5%
3884136 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 41.0 3.42e-01 79.7% 74.8%
3260650 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 41.0 3.62e-01 79.7% 70.9%
3251816 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.57 41.0 2.97e-01 76.8% 36.9%
3186280 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.56 47.0 3.45e-01 98.6% 48.4%
3608938 220.1.1.167 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29707 0.56 41.0 3.52e-01 78.3% 66.1%
3292855 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.56 42.0 3.50e-01 81.2% 71.2%
4266110 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.56 43.0 4.37e-01 97.1% 84.3%
3527472 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.56 42.0 3.51e-01 85.5% 76.3%
3229601 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.55 40.0 4.20e-01 81.2% 91.7%
3619347 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 38.0 3.25e-01 72.5% 74.8%
3173787 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.48e-01 82.6% 84.2%
4217174 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 45.0 4.53e-01 100.0% 92.9%
3266485 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.62e-01 94.2% 84.3%
3940847 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.54 37.0 3.23e-01 72.5% 68.2%
5078549 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.53 42.0 3.32e-01 91.3% 88.1%
3922015 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.53 40.0 3.32e-01 85.5% 72.6%
4023915 220.1.1.53 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C 0.52 41.0 3.55e-01 88.4% 86.1%
3429682 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 40.0 3.99e-01 87.0% 86.7%
4071971 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.52 44.0 3.57e-01 100.0% 71.7%
3943282 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 38.0 3.25e-01 81.2% 48.3%
4105812 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.51 42.0 3.40e-01 92.8% 84.9%
3465976 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 41.0 4.23e-01 91.3% 100.0%
5037345 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.51 39.0 3.26e-01 87.0% 75.2%
3226400 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.50 42.0 3.93e-01 98.6% 75.6%