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ON529533.1__UXY92286.1__X__00040

Bact-Vir

ON529533.1__UXY92286.1__X__00040

Identity

Accession:
ON529533 ↗
Kingdom:
phage

Quality

84.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Novosibvirus› Proteus_phage_RP7

TaxID: 2951182

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-56
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.72e-01 100.0% 74.6%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 4.64e-01 100.0% 95.6%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 45.0 4.28e-01 100.0% 78.6%
3qf3D00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 41.0 3.23e-01 91.1% 39.1%
3cx5A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 42.0 2.95e-01 100.0% 64.1%
3my7A02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.50 40.0 2.95e-01 100.0% 36.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036863 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.58 48.0 3.30e-01 100.0% 24.2%
3692295 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.54 44.0 2.98e-01 96.4% 23.0%
3871306 109.4.1.508 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › KBP_C 0.54 40.0 2.92e-01 87.5% 60.0%
4944988 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.53 46.0 3.08e-01 100.0% 29.6%
4119203 2006.1.1.44 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.51 40.0 2.82e-01 100.0% 24.4%
5057946 3960.1.1.0 ↗ alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain 0.50 34.0 2.88e-01 71.4% 93.3%
D2 medium residues 70-111
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 65.0 5.07e-01 100.0% 47.8%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.68 55.0 4.43e-01 100.0% 62.8%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 4.46e-01 100.0% 51.1%
4gnrA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 58.0 3.73e-01 100.0% 67.2%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 53.0 4.93e-01 100.0% 81.7%
3dv9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 50.0 4.37e-01 92.9% 65.7%
6vhyA02 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.63 48.0 4.26e-01 90.5% 80.9%
4dbgB01 6.10.140.1100 Special › Helix non-globular › Helix Hairpins › 0.62 44.0 4.38e-01 81.0% 78.7%
4q6bA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 42.0 2.79e-01 73.8% 21.4%
4tpsD00 3.30.300.180 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DnaA, N-terminal domain 0.60 49.0 4.09e-01 100.0% 92.9%
1vw4801 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.59 46.0 4.01e-01 95.2% 76.7%
3smvA02 1.10.150.750 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.55 43.0 3.79e-01 100.0% 84.4%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 41.0 3.84e-01 100.0% 95.5%
1i24A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 43.0 2.70e-01 100.0% 34.3%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5073138 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 67.0 4.93e-01 100.0% 39.1%
3313260 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.78 66.0 5.67e-01 100.0% 71.4%
3620979 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 66.0 6.12e-01 100.0% 83.6%
3955434 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 65.0 6.23e-01 100.0% 94.0%
4129352 101.1.1.32 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_DBD 0.76 65.0 5.70e-01 100.0% 76.9%
4014609 101.1.1.79 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.76 64.0 5.67e-01 100.0% 73.8%
4978898 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 63.0 6.21e-01 97.6% 95.6%
3738343 101.1.1.79 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.76 63.0 5.76e-01 100.0% 80.0%
3909922 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.76 63.0 6.09e-01 100.0% 92.0%
4031678 101.1.2.20 ↗ alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.75 62.0 5.56e-01 100.0% 70.8%
3488744 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.75 61.0 5.48e-01 100.0% 87.7%
4009179 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 63.0 5.03e-01 100.0% 50.0%
3492110 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 61.0 5.45e-01 100.0% 87.7%
5057164 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 63.0 4.84e-01 100.0% 49.0%
3997947 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 62.0 5.97e-01 100.0% 96.0%
3426912 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.73 60.0 5.03e-01 100.0% 75.0%
3504389 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 60.0 5.02e-01 100.0% 56.2%
3203378 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 61.0 5.39e-01 100.0% 75.4%
4961853 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.73 61.0 5.16e-01 100.0% 60.0%
3501945 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 60.0 5.33e-01 100.0% 69.2%
3474421 101.1.2.365 ↗ alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.73 59.0 5.19e-01 100.0% 71.4%
3636036 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 60.0 5.44e-01 97.6% 73.3%
3787144 101.1.1.8 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TEA 0.72 60.0 5.08e-01 100.0% 85.3%
5052898 2004.5.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.71 58.0 3.91e-01 100.0% 25.6%
3706618 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.71 57.0 4.81e-01 95.2% 58.7%
4251909 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 59.0 4.78e-01 100.0% 49.4%
3715143 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 57.0 4.82e-01 100.0% 60.0%
3448615 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.70 56.0 4.45e-01 100.0% 62.0%
3921225 101.1.2.137 ↗ alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.69 58.0 4.93e-01 100.0% 77.3%
5003693 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 57.0 5.11e-01 100.0% 75.4%
5008720 101.1.1.548 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 0.69 56.0 5.04e-01 100.0% 75.4%
3561932 101.1.2.137 ↗ alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.69 59.0 4.76e-01 100.0% 58.8%
3720299 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 55.0 4.47e-01 100.0% 56.7%
4966213 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 54.0 4.84e-01 100.0% 73.8%
3910514 108.1.1.32 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_10 0.65 49.0 4.07e-01 85.7% 53.8%
3444967 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.65 48.0 3.65e-01 85.7% 39.1%
3970916 7108.1.1.1 ↗ alpha complex topology › Stl repressor, middle domain › Stl repressor, middle domain › Stl repressor, middle domain › DUF3418 0.63 51.0 4.30e-01 100.0% 72.5%
3968075 2006.1.1.44 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.63 51.0 3.29e-01 100.0% 22.3%
4991597 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.62 49.0 3.21e-01 100.0% 25.2%
3405357 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.60 48.0 3.84e-01 100.0% 62.0%
3895689 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 41.0 2.93e-01 88.1% 30.3%
3611627 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.52 43.0 3.31e-01 100.0% 54.3%