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ON529851.1__UTC28976.1__MARCHEWKA_04640__00446

Bact-Vir

ON529851.1__UTC28976.1__MARCHEWKA_04640__00446

Identity

Accession:
ON529851 ↗
Kingdom:
phage

Quality

79.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Marchewkavirus› Brevundimonas_phage_vB_BpoS-Marchewka

TaxID: 2948604

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-104
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 46.0 4.65e-01 70.8% 91.8%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.66 56.0 4.18e-01 100.0% 65.9%
6aqgA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 49.0 3.54e-01 81.2% 47.5%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.66 54.0 4.22e-01 100.0% 77.3%
1zylA01 3.30.200.70 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.66 49.0 4.41e-01 83.3% 78.6%
3cawA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 54.0 4.55e-01 100.0% 87.9%
1v5rA00 3.30.920.20 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Gas2-like domain 0.65 43.0 3.48e-01 81.2% 34.0%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.65 52.0 4.11e-01 93.8% 89.0%
2rk0A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.64 44.0 3.32e-01 72.9% 75.2%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 51.0 4.13e-01 91.7% 96.9%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.61 54.0 4.22e-01 100.0% 96.1%
5bxrA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 45.0 3.25e-01 81.2% 78.7%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.60 46.0 4.06e-01 79.2% 71.4%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.60 49.0 2.99e-01 91.7% 67.9%
3ne5B01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.59 46.0 3.83e-01 87.5% 95.3%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 45.0 3.16e-01 87.5% 87.8%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 44.0 3.52e-01 85.4% 67.0%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 49.0 4.34e-01 100.0% 68.5%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.57 44.0 3.57e-01 85.4% 81.3%
2e7zA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.55 44.0 4.18e-01 89.6% 96.5%
3e0rA02 3.10.180.40 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › C3-degrading proteinase like domains 0.54 42.0 3.30e-01 91.7% 69.4%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.38e-01 95.8% 43.3%
1zswA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 41.0 2.99e-01 87.5% 40.7%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.52 38.0 3.72e-01 81.2% 85.5%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2641776 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.72 49.0 3.59e-01 70.8% 33.6%
4052370 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 54.0 4.93e-01 83.3% 76.9%
3389015 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 54.0 4.29e-01 85.4% 60.0%
3990517 5.1.4.502 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT80_2nd 0.69 60.0 3.39e-01 100.0% 11.0%
3611368 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.68 59.0 3.38e-01 100.0% 16.1%
4942400 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 50.0 3.76e-01 81.2% 44.0%
3508175 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.67 48.0 4.75e-01 75.0% 78.0%
3192965 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.66 48.0 2.90e-01 81.2% 92.9%
3992808 5.1.4.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1 0.66 54.0 3.27e-01 91.7% 14.6%
4960303 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 45.0 3.69e-01 72.9% 87.4%
4104221 5.1.7.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR, Sortilin-Vps10 0.64 54.0 3.13e-01 100.0% 11.8%
3968197 243.4.1.1 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DsbC_N 0.64 46.0 4.42e-01 100.0% 67.3%
3230405 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 56.0 3.25e-01 100.0% 15.0%
5039702 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 45.0 4.67e-01 77.1% 88.9%
3995113 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.63 45.0 3.60e-01 77.1% 58.9%
4991490 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 48.0 4.38e-01 87.5% 66.2%
1007197 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 49.0 4.27e-01 93.8% 63.2%
3260414 5.1.4.255 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, WD40_RLD 0.60 52.0 3.08e-01 100.0% 14.9%
3273263 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.57 50.0 2.94e-01 100.0% 28.2%
3754362 3426.1.1.0 ↗ beta meanders › Telethonin › Telethonin › Telethonin 0.57 45.0 4.22e-01 87.5% 90.0%
4178829 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.56 44.0 3.41e-01 93.8% 92.8%
3680446 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.55 47.0 3.49e-01 100.0% 51.9%
3443163 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.54 45.0 3.59e-01 97.9% 64.8%
3466771 375.3.1.2 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.54 41.0 3.97e-01 87.5% 74.5%
4465073 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 42.0 3.30e-01 87.5% 41.3%
222939 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.53 39.0 3.78e-01 81.2% 83.9%
3719029 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.53 43.0 3.08e-01 100.0% 28.5%
4008896 11.1.1.1286 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27224 0.53 40.0 3.14e-01 91.7% 39.2%