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ON529852.1__USN13852.1__KABACHOK_00150__00015
Bact-VirON529852.1__USN13852.1__KABACHOK_00150__00015
Identity
- Accession:
- ON529852 ↗
- Kingdom:
- phage
Quality
55.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Jeanschmidtviridae›
Marchewkavirus›
Brevundimonas_phage_vB_BpoS-Kabachok
TaxID: 2948600
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 65-151
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 53.0 | 5.49e-01 | 93.1% | 86.4% |
| 8amqA02 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.66 | 53.0 | 3.43e-01 | 98.9% | 20.2% |
| 4wnfA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 56.0 | 3.92e-01 | 100.0% | 49.0% |
| 1g4uS01 | 1.20.120.260 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain | 0.59 | 44.0 | 3.92e-01 | 100.0% | 54.3% |
| 3bujA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 48.0 | 3.14e-01 | 98.9% | 19.9% |
| 2q58B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 50.0 | 3.35e-01 | 93.1% | 33.4% |
| 3tp3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 46.0 | 3.89e-01 | 98.9% | 51.4% |
| 5nl6A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 48.0 | 4.58e-01 | 100.0% | 77.8% |
| 1e3gA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.55 | 49.0 | 3.57e-01 | 100.0% | 84.8% |
| 4l80D00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.55 | 40.0 | 2.75e-01 | 79.3% | 43.3% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.53 | 44.0 | 3.76e-01 | 93.1% | 60.7% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.51 | 47.0 | 4.22e-01 | 100.0% | 82.9% |
| 2h3gX02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 42.0 | 3.45e-01 | 90.8% | 63.5% |
| 2kkmA01 | 1.20.1440.170 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like | 0.50 | 38.0 | 3.36e-01 | 93.1% | 56.0% |
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 32.0 | 3.85e-01 | 93.1% | 96.7% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3606470 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.75 | 53.0 | 3.97e-01 | 72.4% | 39.5% |
| 4963550 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.67 | 61.0 | 4.63e-01 | 100.0% | 75.0% |
| 3179505 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.64 | 59.0 | 4.79e-01 | 100.0% | 72.3% |
| 3605875 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.63 | 57.0 | 5.16e-01 | 100.0% | 84.3% |
| 3480326 | 109.40.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C | 0.62 | 50.0 | 4.44e-01 | 100.0% | 60.8% |
| 3927597 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.61 | 56.0 | 5.00e-01 | 100.0% | 77.5% |
| 5012672 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.61 | 52.0 | 5.18e-01 | 94.3% | 90.0% |
| 4360342 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.61 | 54.0 | 3.39e-01 | 100.0% | 22.7% |
| 3174008 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 54.0 | 3.32e-01 | 100.0% | 24.9% |
| 3707638 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 52.0 | 3.92e-01 | 100.0% | 44.3% |
| 3176761 | 192.15.1.177 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › PF28401 | 0.60 | 53.0 | 4.75e-01 | 100.0% | 73.6% |
| 5023013 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.59 | 51.0 | 3.72e-01 | 100.0% | 36.7% |
| 3213629 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.58 | 44.0 | 3.00e-01 | 81.6% | 24.7% |
| 3593719 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.58 | 52.0 | 4.06e-01 | 100.0% | 54.1% |
| 4985050 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.58 | 51.0 | 3.65e-01 | 97.7% | 64.3% |
| 3698296 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.57 | 52.0 | 3.32e-01 | 100.0% | 83.8% |
| 3781135 | 3311.1.1.3 ↗ | alpha arrays › Uncharacterized protein CV_1783 › Uncharacterized protein CV_1783 › Uncharacterized protein CV_1783 › PF29045 | 0.57 | 46.0 | 4.33e-01 | 90.8% | 71.4% |
| 3272724 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.57 | 43.0 | 2.92e-01 | 81.6% | 23.6% |
| 3553838 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 51.0 | 3.61e-01 | 100.0% | 46.9% |
| 3938720 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.56 | 52.0 | 4.11e-01 | 100.0% | 84.2% |
| 5040283 | 2006.1.1.14 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD | 0.55 | 41.0 | 2.96e-01 | 90.8% | 28.7% |
| 3393285 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.55 | 50.0 | 4.67e-01 | 98.9% | 82.9% |
| 4509560 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.55 | 42.0 | 3.04e-01 | 86.2% | 96.8% |
| 3574494 | 109.4.1.1833 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27600, PF27601 | 0.54 | 47.0 | 3.28e-01 | 98.9% | 41.0% |
| 3598299 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.52 | 46.0 | 3.52e-01 | 100.0% | 70.5% |
| 5052910 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 42.0 | 3.87e-01 | 93.1% | 68.2% |
| 3193704 | 109.3.1.152 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › NACHT_N | 0.51 | 44.0 | 3.21e-01 | 100.0% | 41.1% |