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ON529853.1__UTC29311.1__BAMBUS_02290__00228

Bact-Vir

ON529853.1__UTC29311.1__BAMBUS_02290__00228

Identity

Accession:
ON529853 ↗
Kingdom:
phage

Quality

79.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Brevundimonas_phage_vB_BpoS-Bambus

TaxID: 2948597

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-62
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 64.0 5.85e-01 89.8% 90.8%
2qe9B01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.75 64.0 4.53e-01 100.0% 50.6%
2pnkA02 1.10.2020.10 Mainly Alpha › Orthogonal Bundle › uronate isomerase, domain 2, chain A › uronate isomerase, domain 2, chain A 0.72 58.0 4.89e-01 100.0% 53.7%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.71 54.0 5.13e-01 83.7% 86.2%
2vkhA03 1.10.10.1780 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.70 46.0 4.07e-01 73.5% 47.8%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.70 60.0 4.29e-01 93.9% 50.7%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.70 56.0 5.13e-01 89.8% 81.5%
2r1iA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 59.0 4.38e-01 100.0% 92.3%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 54.0 4.90e-01 89.8% 82.1%
4ymuD00 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.67 48.0 3.17e-01 77.6% 19.1%
3ephA02 1.10.20.140 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.66 54.0 4.87e-01 100.0% 65.3%
2awnC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 44.0 2.94e-01 71.4% 16.8%
3f51C00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 52.0 4.35e-01 89.8% 66.7%
3brcA02 3.40.50.10150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit 0.65 52.0 3.94e-01 89.8% 89.2%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 51.0 4.14e-01 91.8% 72.8%
2fi1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 52.0 4.81e-01 91.8% 79.7%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.65 45.0 4.62e-01 79.6% 75.0%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 51.0 4.31e-01 89.8% 70.6%
1v1gA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 54.0 3.69e-01 100.0% 39.4%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.64 53.0 4.87e-01 95.9% 75.4%
3b7hA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 51.0 4.50e-01 91.8% 80.3%
1fcdC01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.63 44.0 3.89e-01 75.5% 60.3%
2yn7A00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.62 48.0 3.25e-01 91.8% 73.4%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 43.0 3.98e-01 83.7% 56.5%
2z4sA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 50.0 4.41e-01 89.8% 61.1%
2fnaA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 48.0 4.31e-01 91.8% 60.5%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.61 47.0 4.80e-01 89.8% 93.8%
1y7rA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 52.0 3.88e-01 100.0% 60.6%
4ghjB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 50.0 4.42e-01 93.9% 78.9%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.61 48.0 3.93e-01 87.8% 83.7%
2o5rA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.61 46.0 4.69e-01 89.8% 93.8%
3hhcC00 1.20.1250.60 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interferon lambda 0.60 46.0 3.32e-01 85.7% 63.6%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 37.0 3.27e-01 91.8% 42.9%
1jcfA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.60 46.0 4.10e-01 87.8% 94.7%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 48.0 3.62e-01 100.0% 66.7%
2ky4A01 1.10.3130.20 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › Phycobilisome linker domain 0.58 48.0 3.68e-01 100.0% 87.8%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.57 43.0 4.11e-01 83.7% 86.4%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.57 46.0 3.65e-01 100.0% 70.0%
3b0bC02 6.10.130.30 Special › Helix non-globular › GTP Cyclohydrolase I; Chain A, domain 1 › 0.57 38.0 4.00e-01 87.8% 76.7%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 45.0 4.11e-01 91.8% 77.9%
2krxA01 3.90.940.40 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › Protein CHLORORESPIRATORY REDUCTION 7 0.55 47.0 4.20e-01 100.0% 90.3%
1h1oA02 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.54 43.0 3.58e-01 100.0% 51.2%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 40.0 2.91e-01 95.9% 55.0%
3b40A02 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.53 42.0 4.04e-01 87.8% 86.2%
5xe7A01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.52 42.0 3.02e-01 89.8% 36.6%
2f2gA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.51 41.0 2.82e-01 100.0% 70.7%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082869 105.1.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.87 65.0 5.88e-01 87.8% 60.0%
3257960 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.81 70.0 4.19e-01 100.0% 13.9%
4205244 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.80 57.0 4.94e-01 75.5% 54.7%
3984312 101.1.1.202 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.77 58.0 4.93e-01 81.6% 50.0%
3982565 101.1.1.202 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.75 57.0 5.50e-01 81.6% 72.7%
3224502 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.75 54.0 5.22e-01 75.5% 70.9%
3588951 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.74 59.0 5.61e-01 91.8% 100.0%
3502010 2004.1.1.189 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 0.74 66.0 4.26e-01 100.0% 41.4%
3174920 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.72 50.0 4.15e-01 73.5% 43.5%
3968335 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.71 37.0 3.50e-01 71.4% 40.0%
4032070 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.70 59.0 3.89e-01 93.9% 28.8%
4999216 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.70 59.0 3.82e-01 95.9% 25.8%
3436965 3711.1.1.0 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.69 48.0 3.95e-01 75.5% 43.2%
5073536 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.69 59.0 3.81e-01 95.9% 25.9%
2849648 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.68 56.0 3.61e-01 93.9% 24.5%
3184069 148.1.3.17 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.67 57.0 4.49e-01 95.9% 74.3%
4328415 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.67 57.0 4.86e-01 100.0% 76.5%
5030578 2002.1.1.102 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP 0.66 52.0 3.30e-01 91.8% 22.8%
3964503 5069.1.1.15 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.66 54.0 3.99e-01 100.0% 73.6%
3705852 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.66 51.0 5.23e-01 87.8% 100.0%
4994524 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.65 57.0 3.68e-01 100.0% 25.8%
5063007 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.65 54.0 3.73e-01 95.9% 32.6%
4002075 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 47.0 4.38e-01 81.6% 73.8%
3353 107.1.1.0 ↗ alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c 0.63 44.0 3.86e-01 75.5% 58.7%
3322038 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.62 52.0 4.75e-01 100.0% 70.8%
4031703 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.62 49.0 4.43e-01 89.8% 87.1%
3603891 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.62 44.0 3.51e-01 75.5% 50.0%
4333531 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 39.0 3.87e-01 91.8% 64.0%
3971281 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.56 38.0 3.69e-01 95.9% 61.8%
3838231 107.1.1.9 ↗ alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrome_CBB3 0.54 43.0 3.71e-01 100.0% 57.3%
4556741 309.1.1.11 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › PqqF-like_C_4 0.53 46.0 3.20e-01 100.0% 52.6%
3984540 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.53 37.0 3.57e-01 79.6% 65.5%