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ON529853.1UTC29355.1BAMBUS_02730__00272

Bact-Vir

ON529853.1__UTC29355.1__BAMBUS_02730__00272

Identity

Accession:: ON529853 ↗
Kingdom:: phage

Quality

83.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Brevundimonas_phage_vB_BpoS-Bambus

TaxID: 2948597

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-102

PDB

Domain cluster: representative

CATH (36)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1j5wA02	1.20.58.180	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2	0.66	41.0	4.56e-01	88.7%	79.2%
3dyjA01	1.20.1420.10	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain	0.65	45.0	3.82e-01	73.2%	47.0%
2ix5A03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.64	57.0	4.91e-01	100.0%	80.0%
6wh0A01	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.64	49.0	4.17e-01	80.4%	90.1%
3lqhA02	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.63	52.0	5.13e-01	100.0%	83.0%
1siqA03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.62	55.0	4.75e-01	100.0%	80.0%
3fnbA01	1.20.1440.110	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase	0.62	45.0	4.34e-01	100.0%	66.7%
2or0A03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.61	54.0	4.43e-01	100.0%	69.9%
1avoB00	1.20.120.180	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain	0.61	44.0	3.92e-01	76.3%	85.7%
1yo7A00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.61	53.0	5.04e-01	100.0%	88.3%
5iduC03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.61	54.0	4.60e-01	100.0%	73.0%
4wzxA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.61	39.0	4.38e-01	88.7%	85.3%
1yxrA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.60	39.0	4.31e-01	88.7%	85.1%
2rldA00	1.20.1440.60	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence	0.60	53.0	5.07e-01	100.0%	90.4%
2ckwA04	1.20.960.20	Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A ›	0.60	38.0	3.70e-01	90.7%	57.9%
3gpvA00	1.10.1660.10	Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 ›	0.59	38.0	3.61e-01	80.4%	54.9%
1sqgA01	1.10.940.10	Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like	0.59	36.0	3.21e-01	81.4%	41.8%
1wfdA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.58	41.0	4.19e-01	82.5%	76.3%
2lmgA00	1.20.1270.10	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.58	41.0	4.55e-01	87.6%	95.9%
1f0jA00	1.10.1300.10	Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain	0.58	48.0	3.27e-01	89.7%	87.2%
4l3uA00	1.20.1480.40	Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844	0.57	44.0	4.09e-01	82.5%	79.7%
3kavA00	1.20.1270.360	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.57	50.0	4.92e-01	100.0%	92.2%
6gy8A01	1.20.1170.10	Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; ›	0.55	47.0	3.33e-01	96.9%	82.8%
4gouA03	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.55	48.0	3.90e-01	100.0%	72.6%
7xrxB01	1.20.1420.20	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif	0.55	48.0	3.28e-01	100.0%	76.9%
2yfaA02	1.20.1440.210	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.55	47.0	4.55e-01	100.0%	94.0%
5nl6A02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	44.0	4.26e-01	89.7%	76.9%
1bf5A01	1.20.1050.20	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain	0.54	42.0	3.53e-01	82.5%	98.8%
1quuA01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	45.0	4.14e-01	89.7%	69.0%
3lmfA00	1.20.1270.360	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.54	48.0	4.62e-01	100.0%	90.8%
2qdjA03	1.10.472.140	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 ›	0.52	36.0	3.42e-01	75.3%	60.3%
3f2eA00	1.20.58.800	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	38.0	4.10e-01	79.4%	94.0%
6ygiB01	1.10.4090.10	Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus	0.51	42.0	3.67e-01	89.7%	86.3%
8ek4A01	1.20.120.20	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein	0.51	41.0	3.77e-01	89.7%	79.7%
1v9vA01	1.20.1480.20	Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like	0.51	42.0	4.24e-01	100.0%	95.8%
3l09A01	1.20.58.1460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	45.0	4.51e-01	97.9%	100.0%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5026526	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.70	60.0	6.00e-01	100.0%	89.0%
5056427	3843.1.1.38 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › T4SS_pilin	0.70	49.0	4.74e-01	73.2%	86.4%
3470595	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.64	45.0	3.56e-01	73.2%	55.5%
5046568	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.61	54.0	4.51e-01	100.0%	94.1%
4933307	174.1.1.96 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › PF27307	0.61	54.0	4.60e-01	100.0%	83.7%
3478235	633.23.1.0 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin	0.60	53.0	4.86e-01	100.0%	88.3%
3713201	4323.1.1.1 ↗	alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I	0.60	37.0	3.27e-01	75.3%	42.1%
4985047	4323.1.1.0 ↗	alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C	0.59	37.0	3.31e-01	76.3%	44.3%
3288944	1075.1.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane	0.59	47.0	3.49e-01	89.7%	74.3%
3837826	601.4.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains	0.58	51.0	4.32e-01	100.0%	94.7%
3235996	5001.1.1.60 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx	0.57	52.0	3.70e-01	100.0%	47.7%
3167928	633.1.1.1 ↗	alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain	0.57	51.0	4.58e-01	100.0%	88.9%
3750000	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.55	46.0	4.48e-01	91.8%	81.0%
3831168	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.55	42.0	3.76e-01	83.5%	57.1%
3710496	109.4.1.109 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1	0.54	41.0	2.99e-01	80.4%	33.0%
4958744	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.54	43.0	4.15e-01	88.7%	75.5%
3441715	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.53	45.0	4.29e-01	89.7%	80.9%
3541655	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.53	44.0	4.14e-01	89.7%	72.5%
4164636	185.1.1.5 ↗	alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Gliadin	0.51	42.0	4.01e-01	90.7%	83.5%
3883667	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.51	42.0	4.10e-01	88.7%	91.4%
3408038	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	43.0	3.23e-01	93.8%	47.9%

D2 high residues 142-338

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7yh1A01	3.30.450.30	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic	0.58	30.0	3.95e-01	88.3%	87.7%
3a8kA02	3.30.70.1400	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains	0.56	25.0	3.73e-01	91.9%	94.3%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3218472	214.1.1.1 ↗	a+b two layers › SH2 › SH2 › SH2 › SH2	0.59	29.0	3.59e-01	73.6%	73.6%
3789520	223.2.1.32 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2	0.57	33.0	4.01e-01	90.9%	85.2%
5048830	223.1.1.0 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains	0.56	33.0	4.04e-01	87.8%	90.4%
5050910	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.55	30.0	3.91e-01	89.3%	91.3%
3515029	223.2.1.46 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M	0.55	37.0	4.12e-01	88.8%	86.7%
3344476	223.2.1.33 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3	0.55	32.0	3.85e-01	90.4%	83.7%
3276714	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.55	34.0	3.82e-01	89.3%	78.7%
3314271	223.2.1.32 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2	0.55	32.0	3.79e-01	91.9%	83.0%
3513352	241.15.1.3 ↗	a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25	0.55	28.0	3.48e-01	76.6%	79.1%
4405873	223.2.1.33 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3	0.54	31.0	3.96e-01	90.9%	95.7%
3603056	330.4.1.1 ↗	a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC	0.53	20.0	3.02e-01	73.1%	82.7%
4882206	223.1.1.12 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2	0.53	27.0	3.46e-01	75.1%	81.8%
5049973	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.52	32.0	3.74e-01	89.3%	85.7%
3957622	1.1.8.5 ↗	beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C	0.52	22.0	3.27e-01	88.8%	90.4%
3621156	5104.1.1.1 ↗	a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1	0.52	29.0	3.49e-01	74.1%	81.5%
3879684	223.2.1.46 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M	0.52	36.0	3.93e-01	91.9%	84.2%
3931076	214.1.1.0 ↗	a+b two layers › SH2 › SH2 › SH2	0.51	31.0	3.83e-01	91.9%	96.7%
4948155	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.51	31.0	3.72e-01	89.3%	90.8%

D3 medium residues 339-411

PDB

Domain cluster: representative

D4 medium residues 412-488

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6lumD01	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.73	57.0	4.85e-01	84.4%	80.8%
2jx0A00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.62	54.0	4.49e-01	94.8%	87.0%
2bduA02	1.10.150.340	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain	0.59	42.0	4.31e-01	94.8%	78.4%
1xteA00	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.57	41.0	3.64e-01	89.6%	51.7%
2qgqA01	3.80.30.20	Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › tm_1862 like domain	0.56	50.0	3.66e-01	100.0%	61.3%
1p8dB00	1.10.565.10	Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor	0.53	44.0	3.24e-01	96.1%	72.4%
2hsbA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.53	43.0	3.79e-01	94.8%	93.7%
1q7lB01	1.10.150.900	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.51	35.0	3.53e-01	79.2%	69.1%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3693249	277.1.1.1 ↗	a+b two layers › PX domain › PX domain › PX domain › PX	0.57	39.0	3.27e-01	88.3%	40.8%
4081383	5051.1.1.10 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2	0.56	47.0	2.96e-01	98.7%	27.5%
3871082	277.1.1.1 ↗	a+b two layers › PX domain › PX domain › PX domain › PX	0.53	40.0	3.23e-01	89.6%	41.3%
3364683	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.53	47.0	4.44e-01	94.8%	93.3%
3578256	5055.1.1.0 ↗	extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel	0.53	44.0	4.60e-01	93.5%	98.6%
3579266	5055.1.1.11 ↗	extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › Cation_ATPase_N	0.51	42.0	4.30e-01	93.5%	92.0%

D5 medium residues 489-557_609-631_695-705

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2yvsA02	3.30.70.2560	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	31.0	3.83e-01	77.7%	100.0%
3viqA00	6.10.140.1020	Special › Helix non-globular › Helix Hairpins ›	0.53	32.0	3.12e-01	79.6%	50.0%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5026454	304.126.1.0 ↗	a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C	0.54	32.0	3.85e-01	73.8%	92.3%
4209880	323.1.1.5 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation	0.51	40.0	3.28e-01	85.4%	84.1%
4317954	323.1.1.5 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation	0.51	40.0	3.33e-01	87.4%	95.4%
3579157	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.51	33.0	2.11e-01	98.1%	13.0%

D6 medium residues 558-608_632-694

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1uw0A01	3.30.1740.10	Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type	0.64	36.0	3.89e-01	93.9%	65.6%
4e1pA00	3.30.60.230	Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain	0.56	28.0	3.73e-01	73.7%	96.4%
4aghA00	2.30.31.10	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A	0.52	26.0	3.10e-01	95.6%	68.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3235222	207.1.1.127 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PHA-1	0.56	29.0	2.04e-01	77.2%	13.7%