←Back to structures

ON529854.1__USN14412.1__DONNERLITTCHEN_00110__00012

Bact-Vir

ON529854.1__USN14412.1__DONNERLITTCHEN_00110__00012

Identity

Accession:
ON529854 ↗
Kingdom:
phage

Quality

73.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mesyanzhinovviridae› Donnerlittchenvirus› Janthinobacterium_phage_vB_JliS-Donnerlittchen

TaxID: 2948610

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-115
PDB
Domain cluster: rep: OP947159.1__WBC28288.1__DPMD02_24__00025__D7-135
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 40.0 4.65e-01 97.4% 78.3%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.69 49.0 5.29e-01 99.1% 84.8%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.68 51.0 5.50e-01 100.0% 93.7%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 59.0 5.60e-01 100.0% 87.6%
2zahA02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 35.0 3.42e-01 98.2% 47.7%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 48.0 4.91e-01 100.0% 89.9%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.60 54.0 4.89e-01 100.0% 82.1%
4q7aC02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 38.0 3.97e-01 92.1% 72.2%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 38.0 3.94e-01 87.7% 72.0%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.88e-01 93.9% 73.1%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.55 50.0 4.70e-01 100.0% 90.8%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 39.0 3.75e-01 100.0% 64.8%
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.54 44.0 4.41e-01 99.1% 84.0%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 31.0 3.11e-01 90.4% 52.8%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 44.0 4.08e-01 90.4% 71.8%
1k8wA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.52 42.0 3.37e-01 89.5% 53.9%
1r3eA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.50 41.0 3.32e-01 88.6% 57.0%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965192 1.1.13.67 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2460 0.74 67.0 6.75e-01 98.2% 98.2%
4034209 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.71 65.0 6.15e-01 100.0% 94.8%
1117606 1.1.13.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.67 61.0 5.77e-01 100.0% 93.3%
4033579 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.67 60.0 5.87e-01 100.0% 96.8%
3165990 310.3.1.22 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PF27480, PF30181 0.66 44.0 4.48e-01 100.0% 67.8%
4157825 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 59.0 5.72e-01 100.0% 90.8%
3096576 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 58.0 5.24e-01 100.0% 82.4%
4957560 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 58.0 5.58e-01 100.0% 90.8%
4888732 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.65 58.0 5.24e-01 100.0% 76.3%
184986 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.65 58.0 5.65e-01 100.0% 94.4%
4403880 310.3.1.8 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › T2SSM_b 0.61 47.0 4.34e-01 100.0% 64.1%
3585212 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.60 55.0 4.45e-01 100.0% 84.7%
4888780 304.124.1.5 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › T4-gp15_tss 0.57 52.0 4.10e-01 100.0% 76.1%
4958905 241.5.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › DNA-binding C-terminal domain of the transcription factor MotA › DNA-binding C-terminal domain of the transcription factor MotA › DUF1529 0.57 42.0 4.13e-01 98.2% 72.3%
4883824 304.124.1.6 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF5072 0.56 49.0 4.76e-01 100.0% 84.5%
4943359 304.102.1.13 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.55 42.0 3.36e-01 79.8% 70.6%
4077036 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.54 41.0 3.28e-01 89.5% 40.4%
5033279 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.54 41.0 3.31e-01 83.3% 69.2%
4203309 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 41.0 2.82e-01 83.3% 76.1%
3936044 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.53 47.0 3.57e-01 99.1% 61.4%
3598291 60.1.2.0 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain 0.53 47.0 3.37e-01 99.1% 51.6%
2595266 241.1.1.6 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN 0.52 37.0 3.50e-01 96.5% 61.5%
1954213 241.1.1.6 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN 0.51 37.0 3.43e-01 93.0% 58.6%
3390090 872.1.1.0 ↗ a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.51 40.0 4.22e-01 100.0% 96.0%
3353115 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 36.0 2.85e-01 93.0% 33.5%