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ON529856.1__USN15105.1__LESZY_00710__00071

Bact-Vir

ON529856.1__USN15105.1__LESZY_00710__00071

Identity

Accession:
ON529856 ↗
Kingdom:
phage

Quality

59.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-63
PDB
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.69 43.0 3.63e-01 82.3% 38.6%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.69 48.0 3.35e-01 72.6% 92.3%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.69 59.0 5.53e-01 100.0% 92.5%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 46.0 4.18e-01 74.2% 100.0%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.66 48.0 2.88e-01 77.4% 34.1%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 45.0 4.07e-01 71.0% 51.2%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 44.0 3.78e-01 71.0% 81.7%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.64 51.0 3.99e-01 91.9% 42.5%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.64 47.0 4.13e-01 77.4% 55.1%
1n02A00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.63 46.0 3.86e-01 77.4% 76.5%
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.61 51.0 4.19e-01 100.0% 83.1%
6aqgA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 44.0 3.40e-01 75.8% 90.1%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 45.0 3.81e-01 79.0% 67.6%
3bpqD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.61 47.0 4.18e-01 83.9% 59.3%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 41.0 3.33e-01 71.0% 67.7%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 50.0 3.97e-01 90.3% 99.2%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.60 49.0 4.13e-01 91.9% 73.6%
2xg5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 3.66e-01 72.6% 79.3%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.59 44.0 3.40e-01 82.3% 78.7%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.59 47.0 3.51e-01 91.9% 65.9%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.59 46.0 4.13e-01 85.5% 83.1%
4dxkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 40.0 3.31e-01 72.6% 38.4%
1zxzB00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.59 49.0 3.40e-01 90.3% 73.3%
3g5kA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.59 48.0 3.43e-01 90.3% 77.0%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 50.0 3.15e-01 100.0% 64.7%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 44.0 4.43e-01 87.1% 95.5%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.58 48.0 3.70e-01 90.3% 86.1%
1lm4A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.58 47.0 3.34e-01 90.3% 85.3%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 46.0 3.35e-01 90.3% 73.8%
3qu1A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.58 46.0 3.34e-01 87.1% 70.2%
1o97C00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 46.0 3.10e-01 90.3% 70.1%
1rl4B00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.57 46.0 3.48e-01 90.3% 73.7%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 48.0 3.78e-01 91.9% 99.2%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 38.0 3.75e-01 71.0% 65.7%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 47.0 3.79e-01 100.0% 63.9%
2wtzA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.56 49.0 3.33e-01 100.0% 32.5%
3e3uA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.56 47.0 3.26e-01 91.9% 70.9%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 42.0 4.18e-01 82.3% 95.3%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.56 48.0 3.34e-01 100.0% 52.5%
1lmeA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.55 46.0 3.45e-01 91.9% 77.3%
4b1bA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 40.0 2.49e-01 80.6% 14.4%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.66e-01 80.6% 58.4%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.85e-01 87.1% 45.4%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 3.70e-01 98.4% 65.1%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 46.0 3.66e-01 91.9% 100.0%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.64e-01 91.9% 78.9%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 41.0 3.15e-01 85.5% 78.6%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 38.0 3.17e-01 74.2% 63.9%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.54 45.0 4.06e-01 95.2% 82.0%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 2.96e-01 96.8% 23.5%
1wguA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.24e-01 79.0% 83.5%
3n40P02 2.60.40.3200 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain 0.52 41.0 2.88e-01 88.7% 55.8%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 3.08e-01 100.0% 91.7%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 42.0 3.46e-01 100.0% 66.9%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 41.0 2.71e-01 100.0% 51.4%
2jvnA00 3.90.640.80 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.50 35.0 2.87e-01 75.8% 50.8%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 41.0 3.37e-01 100.0% 66.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5064976 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 53.0 3.92e-01 75.8% 60.6%
1178369 705.1.1.1 beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH 0.71 43.0 4.79e-01 80.6% 77.6%
3971108 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 48.0 4.31e-01 72.6% 53.3%
3964441 9.11.1.1 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.70 51.0 4.68e-01 77.4% 75.0%
1678591 705.1.1.1 beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH 0.68 43.0 4.64e-01 80.6% 75.5%
4927204 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 46.0 4.13e-01 72.6% 50.0%
3298632 220.1.1.44 beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.67 44.0 3.84e-01 71.0% 43.0%
4096233 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.66 46.0 3.36e-01 74.2% 73.6%
5053495 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 45.0 3.36e-01 71.0% 28.7%
3986253 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.65 56.0 4.60e-01 100.0% 89.2%
3949336 220.1.1.216 beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.65 43.0 3.61e-01 71.0% 39.1%
3236144 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 44.0 3.65e-01 71.0% 75.5%
3231343 77.1.1.10 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28998 0.64 45.0 3.53e-01 72.6% 34.6%
138730 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.64 47.0 4.13e-01 77.4% 55.1%
3534391 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.64 47.0 3.34e-01 79.0% 69.5%
3865654 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.63 46.0 3.78e-01 79.0% 74.2%
3212968 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.63 42.0 3.30e-01 71.0% 31.9%
3924597 330.16.1.0 a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.62 43.0 4.18e-01 72.6% 77.1%
3609492 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.62 53.0 4.10e-01 95.2% 55.7%
4275948 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.62 45.0 3.70e-01 79.0% 70.8%
3224914 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.62 46.0 3.81e-01 80.6% 66.1%
4082107 7089.1.1.3 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › MmoD 0.62 50.0 4.83e-01 91.9% 81.4%
3514750 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.62 45.0 3.78e-01 79.0% 69.1%
3678038 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.61 41.0 3.92e-01 71.0% 69.3%
3225336 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 44.0 3.40e-01 77.4% 44.8%
3719687 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 41.0 3.86e-01 71.0% 60.0%
3704328 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.60 49.0 4.52e-01 91.9% 77.1%
5001279 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.59 52.0 3.27e-01 100.0% 31.1%
4999777 2005.1.1.10 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.59 48.0 3.20e-01 90.3% 67.8%
4654713 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.59 44.0 3.43e-01 82.3% 72.4%
4389714 2003.1.2.58 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.59 49.0 3.46e-01 91.9% 65.8%
4039287 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.59 49.0 3.51e-01 90.3% 70.6%
3987299 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.59 48.0 3.73e-01 90.3% 85.9%
3971431 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.58 49.0 4.55e-01 100.0% 82.1%
1565067 9.23.1.2 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_8 0.58 44.0 3.68e-01 87.1% 76.9%
3224967 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.57 49.0 3.31e-01 100.0% 25.9%
4420329 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.57 48.0 3.42e-01 91.9% 70.3%
4927967 2003.1.2.297 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_dim 0.57 44.0 2.75e-01 88.7% 20.9%
3999169 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.56 46.0 2.96e-01 93.5% 26.3%
4432262 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.56 38.0 3.12e-01 71.0% 41.7%
3582308 220.1.1.16 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF1681 0.56 44.0 3.81e-01 85.5% 74.7%
3218903 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.56 45.0 3.29e-01 100.0% 29.0%
3737837 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.65e-01 98.4% 100.0%
3934016 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 45.0 2.83e-01 95.2% 97.9%
4945655 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.78e-01 90.3% 72.0%
4280539 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.54 43.0 2.45e-01 93.5% 26.7%
5011251 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.53 40.0 3.25e-01 82.3% 68.5%
4028484 7.1.1.7 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.53 42.0 3.24e-01 87.1% 81.4%
3255946 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 3.70e-01 80.6% 73.8%
3916473 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 44.0 3.82e-01 95.2% 79.0%
3786015 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 42.0 2.46e-01 93.5% 25.4%
3789900 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.53 39.0 3.10e-01 80.6% 45.9%
4929364 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.52 35.0 3.50e-01 71.0% 75.4%
3694123 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 41.0 2.62e-01 96.8% 55.4%
3280521 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.51 41.0 2.87e-01 91.9% 38.3%
3585491 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 43.0 2.65e-01 93.5% 19.3%
3644584 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.51 35.0 2.81e-01 74.2% 35.0%
4961646 300.1.1.18 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle 0.51 39.0 2.97e-01 85.5% 85.5%
4017268 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.50 41.0 2.76e-01 93.5% 92.0%
5064402 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.50 37.0 3.23e-01 83.9% 82.7%
4028996 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 42.0 3.18e-01 91.9% 48.3%
D2 high residues 73-136
PDB