←Back to structures
ON529857.1__USN15157.1__KIKIMORA_00100__00010
Bact-VirON529857.1__USN15157.1__KIKIMORA_00100__00010
Identity
- Accession:
- ON529857 ↗
- Kingdom:
- phage
Quality
75.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Jeanschmidtviridae›
Kikimoravirus›
Brevundimonas_phage_vB_BpoS-Kikimora
TaxID: 2948601
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-54
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.88 | 71.0 | 7.19e-01 | 88.5% | 96.1% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.80 | 72.0 | 6.85e-01 | 100.0% | 88.5% |
| 4od4A02 | 1.20.120.1780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase | 0.77 | 68.0 | 5.23e-01 | 100.0% | 47.9% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.77 | 58.0 | 5.86e-01 | 78.8% | 80.8% |
| 4ixjA01 | 3.30.1300.80 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.74 | 61.0 | 5.27e-01 | 88.5% | 74.0% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.72 | 57.0 | 5.39e-01 | 88.5% | 82.8% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 59.0 | 5.97e-01 | 94.2% | 100.0% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 58.0 | 5.67e-01 | 98.1% | 84.2% |
| 3p01A01 | 6.10.140.590 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 53.0 | 4.64e-01 | 84.6% | 53.0% |
| 1lm3B00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.70 | 57.0 | 4.64e-01 | 100.0% | 47.2% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.67 | 52.0 | 4.21e-01 | 84.6% | 78.8% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.65 | 49.0 | 4.86e-01 | 82.7% | 80.4% |
| 2vk9A04 | 1.10.274.80 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › | 0.65 | 57.0 | 4.55e-01 | 100.0% | 100.0% |
| 3r6nA02 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 55.0 | 3.90e-01 | 96.2% | 33.5% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.60 | 40.0 | 2.99e-01 | 71.2% | 25.4% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.59 | 43.0 | 4.54e-01 | 86.5% | 93.3% |
| 7tzoA01 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.57 | 49.0 | 3.51e-01 | 98.1% | 29.3% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3168913 | 228.1.1.1 ↗ | a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C | 0.87 | 76.0 | 5.05e-01 | 100.0% | 26.3% |
| 3696717 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.82 | 72.0 | 4.85e-01 | 100.0% | 27.4% |
| 5018026 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.80 | 67.0 | 6.82e-01 | 100.0% | 98.0% |
| 4221177 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.80 | 67.0 | 6.81e-01 | 90.4% | 100.0% |
| 3210666 | 3559.1.1.35 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mis12 | 0.78 | 68.0 | 5.52e-01 | 100.0% | 52.0% |
| 4618805 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.67 | 57.0 | 5.64e-01 | 100.0% | 90.9% |
| 3604586 | 632.11.1.16 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › PF27356 | 0.65 | 54.0 | 5.07e-01 | 94.2% | 75.4% |
| 3231843 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.64 | 52.0 | 4.68e-01 | 90.4% | 64.0% |
| 3299872 | 5063.1.1.3 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › NADH-u_ox-rdase | 0.64 | 56.0 | 4.80e-01 | 98.1% | 63.5% |
| 5054157 | 632.11.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF357 | 0.62 | 51.0 | 4.54e-01 | 92.3% | 66.7% |