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ON529857.1__USN15205.1__KIKIMORA_00580__00058
Bact-VirON529857.1__USN15205.1__KIKIMORA_00580__00058
Identity
- Accession:
- ON529857 ↗
- Kingdom:
- phage
Quality
85.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Jeanschmidtviridae›
Kikimoravirus›
Brevundimonas_phage_vB_BpoS-Kikimora
TaxID: 2948601
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-66
Domain cluster:
rep: NC_019406.1__YP_006988407.1__CcrColossus_gp173__00173__D3-58
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lefA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.69 | 59.0 | 5.23e-01 | 95.0% | 72.1% |
| 6jrpA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.68 | 59.0 | 5.89e-01 | 95.0% | 98.4% |
| 2crjA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.67 | 55.0 | 4.88e-01 | 95.0% | 65.2% |
| 8f7aA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.66 | 47.0 | 2.68e-01 | 76.7% | 17.8% |
| 3cqxC00 | 1.20.58.890 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 50.0 | 4.51e-01 | 95.0% | 60.5% |
| 3nrtA00 | 6.20.350.10 | Special › Other non-globular › Actin; Chain A, domain 4 › | 0.63 | 57.0 | 4.87e-01 | 100.0% | 74.2% |
| 2eucA00 | 1.10.8.570 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Hypothetical protein YfmB | 0.61 | 48.0 | 4.04e-01 | 88.3% | 89.7% |
| 1oksA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.60 | 46.0 | 4.93e-01 | 98.3% | 92.5% |
| 5t8uB01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.60 | 54.0 | 3.51e-01 | 100.0% | 41.7% |
| 1ezfC00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.59 | 52.0 | 3.29e-01 | 100.0% | 19.7% |
| 2f22A00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.59 | 51.0 | 3.94e-01 | 98.3% | 85.2% |
| 4m7cB00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.59 | 42.0 | 3.00e-01 | 76.7% | 52.0% |
| 4n1kD00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.59 | 52.0 | 4.50e-01 | 100.0% | 71.3% |
| 2oebA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.59 | 53.0 | 3.93e-01 | 100.0% | 69.1% |
| 2g80A02 | 1.10.720.60 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.57 | 50.0 | 4.57e-01 | 98.3% | 91.0% |
| 5fb0A02 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.57 | 44.0 | 3.48e-01 | 81.7% | 63.4% |
| 3pvlA01 | 1.25.40.530 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain | 0.56 | 40.0 | 2.86e-01 | 78.3% | 43.3% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.56 | 41.0 | 4.25e-01 | 96.7% | 83.6% |
| 1mivA02 | 1.10.110.30 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › | 0.55 | 41.0 | 3.56e-01 | 81.7% | 54.2% |
| 3rqzC00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.55 | 40.0 | 2.71e-01 | 80.0% | 91.4% |
| 2c12A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 36.0 | 2.94e-01 | 71.7% | 79.5% |
| 2rcnA03 | 1.10.40.50 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Probable gtpase engc; domain 3 | 0.54 | 38.0 | 3.80e-01 | 76.7% | 82.3% |
| 6k4yI00 | 1.10.1810.10 | Mainly Alpha › Orthogonal Bundle › Anti-sigma factor AsiA › Anti-Sigma Factor A | 0.53 | 40.0 | 3.61e-01 | 83.3% | 81.8% |
| 3h0lA00 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.53 | 45.0 | 2.73e-01 | 100.0% | 40.6% |
| 3c7aA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.51 | 42.0 | 3.04e-01 | 100.0% | 84.8% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3775736 | 109.4.1.1878 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Focadhesin, DUF3730 | 0.82 | 45.0 | 2.36e-01 | 90.0% | 1.8% |
| 3605979 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.75 | 64.0 | 6.29e-01 | 93.3% | 92.3% |
| 3872651 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 40.0 | 2.61e-01 | 88.3% | 12.7% |
| 3540239 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.72 | 45.0 | 3.65e-01 | 96.7% | 36.2% |
| 3169978 | 4229.1.1.1 ↗ | alpha bundles › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › IDO | 0.70 | 44.0 | 2.80e-01 | 90.0% | 13.5% |
| 3992404 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.70 | 59.0 | 5.26e-01 | 93.3% | 69.4% |
| 3438343 | 3965.1.1.0 ↗ | alpha arrays › Origin recognition complex subunit 3 helical insert domain › Origin recognition complex subunit 3 helical insert domain › Origin recognition complex subunit 3 helical insert domain | 0.69 | 58.0 | 4.25e-01 | 91.7% | 49.7% |
| 3519620 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.69 | 57.0 | 4.80e-01 | 96.7% | 53.6% |
| 3410150 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.69 | 57.0 | 5.99e-01 | 93.3% | 100.0% |
| 3781276 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.68 | 57.0 | 5.65e-01 | 98.3% | 92.3% |
| 4296289 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.66 | 60.0 | 4.04e-01 | 98.3% | 50.2% |
| 4643202 | 2008.1.1.181 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HaeIII | 0.66 | 56.0 | 3.44e-01 | 90.0% | 19.0% |
| 3994526 | 7579.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase | 0.65 | 57.0 | 3.30e-01 | 98.3% | 40.7% |
| 3570625 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.65 | 50.0 | 4.33e-01 | 95.0% | 54.4% |
| 3188577 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.65 | 54.0 | 3.44e-01 | 90.0% | 35.4% |
| 3550774 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.64 | 50.0 | 5.01e-01 | 86.7% | 96.7% |
| 3288662 | 620.1.1.5 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › MDMPI_N | 0.62 | 57.0 | 4.13e-01 | 100.0% | 63.9% |
| 3391114 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.62 | 51.0 | 4.99e-01 | 93.3% | 84.6% |
| 3673669 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.61 | 51.0 | 3.11e-01 | 100.0% | 29.7% |
| 5050259 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.61 | 47.0 | 3.27e-01 | 81.7% | 65.9% |
| 3613552 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 53.0 | 3.70e-01 | 95.0% | 36.7% |
| 4248927 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.60 | 50.0 | 3.98e-01 | 100.0% | 45.6% |
| 3747042 | 7552.1.1.1 ↗ | a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase | 0.58 | 46.0 | 2.70e-01 | 86.7% | 10.9% |
| 4030557 | 101.1.2.281 ↗ | alpha arrays › HTH › HTH › winged helix domain › Tfb2 | 0.58 | 49.0 | 3.68e-01 | 100.0% | 39.3% |
| 3182988 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.58 | 48.0 | 4.72e-01 | 93.3% | 90.8% |
| 4291138 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.58 | 46.0 | 3.71e-01 | 98.3% | 44.0% |
| 5051347 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.57 | 44.0 | 4.16e-01 | 86.7% | 69.3% |
| 4326223 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.57 | 50.0 | 4.01e-01 | 100.0% | 50.8% |
| 4241233 | 7552.1.1.1 ↗ | a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase | 0.57 | 45.0 | 2.65e-01 | 86.7% | 11.4% |
| 4508255 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.56 | 43.0 | 3.50e-01 | 91.7% | 43.3% |
| 4289692 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.55 | 46.0 | 3.83e-01 | 100.0% | 50.8% |
| 4190969 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.55 | 48.0 | 3.85e-01 | 100.0% | 48.0% |
| 4322551 | 604.23.1.0 ↗ | alpha bundles › Spectrin repeat-like › Sbi complement-binding domain › Sbi complement-binding domain | 0.55 | 43.0 | 4.50e-01 | 81.7% | 90.9% |
| 3994831 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.55 | 46.0 | 3.05e-01 | 100.0% | 21.1% |
| 3601655 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 42.0 | 2.58e-01 | 83.3% | 94.8% |
| 3742375 | 6171.1.1.1 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD | 0.54 | 43.0 | 3.18e-01 | 85.0% | 39.3% |
| 1297584 | 604.12.1.3 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Thia_YuaJ | 0.54 | 47.0 | 3.34e-01 | 100.0% | 49.2% |
| 4242921 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.53 | 45.0 | 3.62e-01 | 100.0% | 46.9% |
| 53487 | 4033.1.1.0 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like | 0.53 | 36.0 | 2.93e-01 | 71.7% | 81.5% |
| 3557240 | 3722.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 | 0.53 | 46.0 | 2.91e-01 | 95.0% | 19.0% |
| 4110761 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.52 | 40.0 | 3.38e-01 | 91.7% | 45.8% |
| 3647728 | 197.1.1.3 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP | 0.52 | 40.0 | 3.26e-01 | 83.3% | 72.2% |