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ON529857.1__USN15311.1__KIKIMORA_01650__00164

Bact-Vir

ON529857.1__USN15311.1__KIKIMORA_01650__00164

Identity

Accession:
ON529857 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-57
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.75 58.0 4.79e-01 100.0% 47.4%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 62.0 5.26e-01 100.0% 55.3%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 63.0 5.05e-01 100.0% 49.1%
1e5dA02 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.73 56.0 3.58e-01 96.3% 18.2%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 62.0 4.92e-01 100.0% 47.7%
3terA00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 66.0 4.96e-01 100.0% 46.2%
1a22A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.71 56.0 3.87e-01 100.0% 26.1%
2cfuA01 3.60.15.30 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Metallo-beta-lactamase domain 0.68 59.0 3.60e-01 100.0% 15.4%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 58.0 4.23e-01 96.3% 49.3%
4narA01 3.40.50.11440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain 0.67 58.0 3.78e-01 100.0% 42.6%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.66 60.0 4.61e-01 100.0% 47.0%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 55.0 4.19e-01 94.4% 59.4%
3swhA01 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.66 46.0 3.22e-01 72.2% 87.9%
1nu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 54.0 4.05e-01 96.3% 51.0%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 53.0 4.23e-01 92.6% 65.1%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 51.0 4.19e-01 94.4% 60.7%
3cnxA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 54.0 4.12e-01 100.0% 63.8%
6g94A00 1.20.950.20 Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C 0.64 55.0 3.90e-01 100.0% 33.7%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 53.0 4.05e-01 94.4% 62.5%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 51.0 3.73e-01 94.4% 32.5%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.63 44.0 2.49e-01 74.1% 9.8%
2gxfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 49.0 3.88e-01 94.4% 40.7%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.01e-01 81.5% 76.9%
4jz6A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.62 50.0 3.21e-01 100.0% 19.4%
7drjB01 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.62 53.0 3.74e-01 100.0% 53.0%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 51.0 3.82e-01 96.3% 52.0%
3rgaA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 53.0 3.94e-01 100.0% 50.0%
3lv0A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.61 52.0 3.95e-01 100.0% 92.1%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.61 52.0 4.52e-01 100.0% 95.5%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 48.0 4.12e-01 90.7% 68.1%
3qaoA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.60 40.0 3.01e-01 100.0% 26.4%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 50.0 3.74e-01 94.4% 54.9%
3oeeY02 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.60 50.0 3.84e-01 98.1% 100.0%
1fs7A01 1.10.1130.10 Mainly Alpha › Orthogonal Bundle › Flavocytochrome C3; Chain A, domain 2 › Flavocytochrome C3; Chain A 0.60 35.0 2.17e-01 77.8% 9.2%
7dklA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 3.53e-01 74.1% 100.0%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 43.0 4.04e-01 100.0% 63.4%
1cc8A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 33.0 3.05e-01 94.4% 40.3%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.26e-01 100.0% 98.8%
2rgqB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 3.64e-01 94.4% 56.4%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 48.0 4.15e-01 100.0% 58.7%
5ygqA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 47.0 3.24e-01 96.3% 85.8%
1w36B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 46.0 3.08e-01 100.0% 21.0%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 44.0 3.45e-01 94.4% 50.7%
4fxxB01 6.10.140.1790 Special › Helix non-globular › Helix Hairpins › 0.57 48.0 4.45e-01 100.0% 81.9%
3ehgA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 50.0 3.82e-01 100.0% 72.0%
4y4mC00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 3.07e-01 100.0% 86.3%
3k8pC01 1.20.58.1440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 46.0 3.70e-01 100.0% 46.7%
3zheB02 1.20.190.60 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 0.56 45.0 3.27e-01 98.1% 30.9%
1w8iA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.55 40.0 2.88e-01 94.4% 26.6%
2gaxA00 3.40.1490.10 Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 0.55 40.0 3.11e-01 81.5% 74.6%
2qksA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 48.0 3.84e-01 100.0% 87.7%
3a43A01 3.30.2320.50 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › 0.53 44.0 3.79e-01 94.4% 59.5%
1gk3A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.53 46.0 3.14e-01 98.1% 48.0%
2hx1A02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 36.0 2.90e-01 74.1% 41.0%
3nycA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 2.98e-01 98.1% 43.7%
3ez2A01 1.10.1660.30 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.52 34.0 3.11e-01 74.1% 51.4%
3axbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 2.91e-01 98.1% 76.6%
3fz5B00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 42.0 2.90e-01 90.7% 32.4%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.51 44.0 4.14e-01 98.1% 81.8%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3630462 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.78 69.0 5.07e-01 100.0% 39.3%
3718200 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.78 67.0 5.17e-01 100.0% 46.4%
4029803 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.77 66.0 5.00e-01 100.0% 40.8%
3506058 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.77 67.0 5.50e-01 100.0% 61.0%
3392569 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.76 65.0 4.91e-01 100.0% 40.8%
3244401 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.76 63.0 4.98e-01 100.0% 44.3%
3741919 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.76 68.0 5.48e-01 100.0% 55.0%
3790375 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.76 66.0 5.06e-01 100.0% 45.6%
4178886 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.76 67.0 5.45e-01 100.0% 54.0%
4463557 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.75 65.0 5.47e-01 100.0% 57.9%
3783976 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.75 65.0 5.56e-01 100.0% 60.0%
3214720 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.74 64.0 5.37e-01 100.0% 56.8%
3633283 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.74 62.0 6.19e-01 100.0% 90.9%
3786069 604.12.1.56 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ASTER 0.74 64.0 5.83e-01 100.0% 72.9%
3771989 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.73 64.0 4.81e-01 100.0% 40.7%
3596846 4992.1.1.0 extended segments › RelB-like › RelB-like › RelB-like 0.73 64.0 4.69e-01 100.0% 42.1%
3582590 3291.1.1.9 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF2371 0.71 66.0 4.93e-01 100.0% 62.5%
4403783 247.1.1.17 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP 0.71 56.0 3.60e-01 100.0% 18.8%
3350649 192.8.1.342 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PHM7_cyt 0.71 61.0 5.14e-01 100.0% 57.9%
3933404 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.70 62.0 4.50e-01 100.0% 36.7%
3786162 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.69 60.0 5.00e-01 100.0% 57.9%
3333117 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.68 57.0 4.59e-01 100.0% 48.6%
5041715 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.68 58.0 4.69e-01 100.0% 61.8%
4410759 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 56.0 4.57e-01 100.0% 47.8%
3493963 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 61.0 4.92e-01 100.0% 64.0%
5045811 4323.1.1.0 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.67 58.0 4.17e-01 100.0% 32.7%
5081618 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.67 60.0 4.59e-01 100.0% 54.2%
3239115 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.66 58.0 3.49e-01 100.0% 15.0%
4990510 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.65 57.0 4.26e-01 100.0% 90.7%
5040013 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.65 57.0 4.84e-01 100.0% 60.0%
169507 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.64 52.0 4.20e-01 94.4% 60.7%
4033043 616.1.1.41 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 0.64 57.0 4.77e-01 100.0% 63.3%
4962497 5073.1.3.0 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Potassium-transporting ATPase subunit KdpB transmembrane domain 0.64 56.0 3.67e-01 100.0% 23.5%
4887090 3834.1.1.1 alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA_TcB_BD 0.63 55.0 3.35e-01 100.0% 34.7%
3306174 6026.1.1.15 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › DUF4371 0.62 49.0 4.13e-01 83.3% 88.2%
4030906 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 49.0 3.86e-01 96.3% 75.2%
4937710 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.59 51.0 4.08e-01 100.0% 66.1%
3509614 3959.1.1.1 alpha duplicates or obligate multimers › Protein Hikeshi dimerization domain › Protein Hikeshi dimerization domain › Protein Hikeshi dimerization domain › Hikeshi-like_C 0.59 51.0 4.88e-01 100.0% 85.7%
3879758 192.29.1.50 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PTPLA 0.58 51.0 3.39e-01 100.0% 25.2%
3709419 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.58 48.0 3.65e-01 100.0% 80.0%
4025011 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.58 46.0 3.71e-01 100.0% 42.5%
5040463 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.57 42.0 2.69e-01 79.6% 18.3%
4986986 3633.1.1.0 alpha duplicates or obligate multimers › Haptoglobin-hemoglobin receptor › Haptoglobin-hemoglobin receptor › Haptoglobin-hemoglobin receptor 0.57 49.0 3.34e-01 100.0% 100.0%
4016874 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.56 49.0 3.02e-01 100.0% 65.5%
5058010 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.56 47.0 3.47e-01 92.6% 98.6%
3744587 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.55 50.0 3.86e-01 100.0% 55.7%
4965287 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.55 47.0 2.97e-01 96.3% 37.9%
3613005 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 46.0 3.37e-01 100.0% 36.0%
3505694 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 46.0 3.20e-01 98.1% 36.5%
4214015 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.52 47.0 3.67e-01 100.0% 66.4%