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ON529857.1__USN15333.1__KIKIMORA_01870__00186
Bact-VirON529857.1__USN15333.1__KIKIMORA_01870__00186
Identity
- Accession:
- ON529857 ↗
- Kingdom:
- phage
Quality
77.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Jeanschmidtviridae›
Kikimoravirus›
Brevundimonas_phage_vB_BpoS-Kikimora
TaxID: 2948601
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-83
Domain cluster:
rep: NC_019411.1__YP_006990024.1__D870_gp130__00291__D8-84
D2
high
residues 95-177
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zxqA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.67 | 52.0 | 3.59e-01 | 83.1% | 77.4% |
| 3ecqA02 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.65 | 50.0 | 3.55e-01 | 83.1% | 77.2% |
| 1a7tA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.64 | 46.0 | 3.33e-01 | 75.9% | 54.6% |
| 3pg4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.63 | 45.0 | 3.30e-01 | 74.7% | 56.1% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.63 | 53.0 | 4.97e-01 | 96.4% | 74.8% |
| 1wuoA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.63 | 45.0 | 3.30e-01 | 74.7% | 56.2% |
| 1dxkA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.61 | 45.0 | 3.32e-01 | 78.3% | 56.6% |
| 4xrtA02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 49.0 | 4.01e-01 | 88.0% | 62.5% |
| 6t5kC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.60 | 45.0 | 3.27e-01 | 78.3% | 55.4% |
| 2ffsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 50.0 | 4.15e-01 | 91.6% | 56.6% |
| 2psoB02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 51.0 | 4.02e-01 | 96.4% | 65.2% |
| 1xkzC00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.58 | 46.0 | 3.33e-01 | 88.0% | 57.7% |
| 2uvaG07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.57 | 46.0 | 3.91e-01 | 88.0% | 90.4% |
| 2lmcB00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.56 | 35.0 | 4.01e-01 | 94.0% | 86.9% |
| 4g7nA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.56 | 43.0 | 3.84e-01 | 84.3% | 69.4% |
| 2e3nA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 43.0 | 3.20e-01 | 85.5% | 80.5% |
| 6u5uG07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.55 | 44.0 | 3.87e-01 | 89.2% | 91.7% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.55 | 46.0 | 4.51e-01 | 96.4% | 83.7% |
| 1ul7A00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.55 | 41.0 | 3.91e-01 | 94.0% | 65.7% |
| 3ewaA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 43.0 | 3.16e-01 | 88.0% | 96.4% |
| 6u5vB07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.54 | 43.0 | 3.80e-01 | 88.0% | 91.5% |
| 5f7uA02 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.54 | 46.0 | 3.44e-01 | 96.4% | 90.3% |
| 3qeeB00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 43.0 | 3.00e-01 | 88.0% | 36.5% |
| 3fm8A00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.54 | 48.0 | 4.54e-01 | 97.6% | 85.7% |
| 4da5A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 35.0 | 3.52e-01 | 92.8% | 65.1% |
| 3gqsB00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.53 | 46.0 | 4.31e-01 | 96.4% | 82.2% |
| 2nwvA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.52 | 39.0 | 3.62e-01 | 83.1% | 60.7% |
| 4kt3B00 | 3.10.450.170 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › type vi secretion system effector-immunity co pseudomonas protegens | 0.52 | 39.0 | 3.46e-01 | 81.9% | 55.5% |
| 3n91A02 | 2.40.128.420 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 46.0 | 3.94e-01 | 100.0% | 89.7% |
| 1i2mB00 | 2.130.10.30 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II | 0.52 | 43.0 | 2.87e-01 | 96.4% | 57.2% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.52 | 44.0 | 3.24e-01 | 100.0% | 50.6% |
| 1jlxA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 41.0 | 3.46e-01 | 86.7% | 87.9% |
| 3kztA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.27e-01 | 78.3% | 78.0% |
| 5yjwA00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.51 | 40.0 | 2.62e-01 | 90.4% | 87.0% |
| 2qz5A00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 40.0 | 3.34e-01 | 86.7% | 77.0% |
| 2nlvA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.50 | 38.0 | 3.54e-01 | 83.1% | 61.6% |
| 1gmeA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 38.0 | 3.17e-01 | 98.8% | 45.3% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3890276 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.70 | 56.0 | 5.75e-01 | 94.0% | 91.3% |
| 3228484 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.68 | 48.0 | 3.41e-01 | 95.2% | 24.3% |
| 3505004 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.67 | 41.0 | 4.06e-01 | 77.1% | 57.8% |
| 3801170 | 6129.1.1.0 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family | 0.65 | 47.0 | 3.34e-01 | 74.7% | 28.6% |
| 4234511 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.65 | 45.0 | 3.41e-01 | 74.7% | 31.9% |
| 3502373 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.65 | 41.0 | 3.81e-01 | 77.1% | 51.5% |
| 3190697 | 2484.1.1.12 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase | 0.63 | 54.0 | 4.00e-01 | 95.2% | 45.0% |
| 4861973 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.63 | 55.0 | 5.15e-01 | 96.4% | 78.4% |
| 4880573 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.62 | 46.0 | 3.35e-01 | 78.3% | 55.8% |
| 3515855 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.62 | 39.0 | 3.73e-01 | 78.3% | 53.0% |
| 417659 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.61 | 50.0 | 3.99e-01 | 91.6% | 64.8% |
| 4436313 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.60 | 50.0 | 4.93e-01 | 91.6% | 83.3% |
| 4940436 | 3414.1.1.0 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein | 0.60 | 32.0 | 3.13e-01 | 81.9% | 45.6% |
| 3501513 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.60 | 38.0 | 3.65e-01 | 78.3% | 53.5% |
| 3506941 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.59 | 38.0 | 3.45e-01 | 77.1% | 47.4% |
| 1715838 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.58 | 48.0 | 3.96e-01 | 91.6% | 61.9% |
| 3625014 | 216.1.1.16 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med27 | 0.58 | 51.0 | 4.09e-01 | 100.0% | 70.6% |
| 3930230 | 331.4.1.5 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1_BRSK | 0.58 | 48.0 | 4.33e-01 | 91.6% | 67.8% |
| 4178727 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.58 | 46.0 | 3.34e-01 | 100.0% | 31.6% |
| 4371211 | 3321.1.1.1 ↗ | a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander | 0.57 | 46.0 | 3.67e-01 | 89.2% | 70.9% |
| 3992247 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.57 | 35.0 | 3.56e-01 | 75.9% | 61.2% |
| 4663376 | 3593.1.1.1 ↗ | a+b complex topology › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › CagA_N | 0.57 | 46.0 | 3.06e-01 | 92.8% | 42.1% |
| 4137984 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.56 | 42.0 | 3.77e-01 | 80.7% | 77.5% |
| 3258377 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.56 | 43.0 | 4.27e-01 | 83.1% | 80.0% |
| 3169896 | 3321.1.1.1 ↗ | a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander | 0.56 | 45.0 | 3.61e-01 | 88.0% | 73.3% |
| 185760 | 292.2.1.2 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Plk4_PB1 | 0.56 | 43.0 | 3.86e-01 | 84.3% | 70.6% |
| 3486056 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 45.0 | 3.67e-01 | 88.0% | 53.6% |
| 3480941 | 73.1.1.1 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA | 0.55 | 49.0 | 4.54e-01 | 100.0% | 80.0% |
| 168173 | 4276.1.1.1 ↗ | a+b two layers › XisI-like › XisI-like › XisI-like › XisI | 0.54 | 40.0 | 3.69e-01 | 80.7% | 59.6% |
| 4457054 | 3321.1.1.1 ↗ | a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander | 0.54 | 44.0 | 3.77e-01 | 89.2% | 83.7% |
| 3691059 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.54 | 48.0 | 3.84e-01 | 100.0% | 80.6% |
| 3815861 | 5.1.4.255 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, WD40_RLD | 0.54 | 48.0 | 3.14e-01 | 100.0% | 73.4% |
| 3846048 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.53 | 44.0 | 3.24e-01 | 88.0% | 75.1% |
| 3254588 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.53 | 46.0 | 3.03e-01 | 97.6% | 27.1% |
| 3716988 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.53 | 41.0 | 2.75e-01 | 83.1% | 37.9% |
| 3188984 | 247.1.1.27 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DUF4336 | 0.53 | 47.0 | 3.26e-01 | 97.6% | 41.8% |
| 4039533 | 3321.1.1.1 ↗ | a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander | 0.52 | 41.0 | 3.40e-01 | 88.0% | 78.1% |
| 6662 | 4276.1.1.1 ↗ | a+b two layers › XisI-like › XisI-like › XisI-like › XisI | 0.52 | 39.0 | 3.62e-01 | 83.1% | 60.7% |
| 2466103 | 265.1.1.2 ↗ | a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Phage_coat | 0.52 | 45.0 | 3.93e-01 | 97.6% | 80.2% |
| 3644335 | 5.1.4.271 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 | 0.51 | 41.0 | 2.65e-01 | 88.0% | 28.8% |
| 4332532 | 5.1.4.309 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF29630 | 0.51 | 40.0 | 2.59e-01 | 86.7% | 46.4% |
| 3217775 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.50 | 31.0 | 3.16e-01 | 89.2% | 61.2% |
| 2557291 | 7575.1.1.4 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 | 0.50 | 45.0 | 2.97e-01 | 100.0% | 26.9% |
| 4958957 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.50 | 38.0 | 3.13e-01 | 80.7% | 60.0% |