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ON529857.1__USN15337.1__KIKIMORA_01910__00190

Bact-Vir

ON529857.1__USN15337.1__KIKIMORA_01910__00190

Identity

Accession:
ON529857 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Kikimoravirus› Brevundimonas_phage_vB_BpoS-Kikimora

TaxID: 2948601

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-119
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dimA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 40.0 3.35e-01 74.4% 93.9%
3q6kA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 49.0 3.53e-01 100.0% 66.6%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 42.0 3.96e-01 100.0% 66.7%
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 49.0 3.41e-01 100.0% 92.4%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 47.0 3.38e-01 97.4% 84.6%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.54 41.0 4.04e-01 87.2% 75.2%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 39.0 3.62e-01 81.2% 60.4%
4uuwA03 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.53 39.0 3.63e-01 77.8% 66.7%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.52 38.0 3.63e-01 76.1% 80.9%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.66e-01 82.1% 86.4%
4fflA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 38.0 3.03e-01 79.5% 74.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 28.0 3.57e-01 79.5% 95.4%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 39.0 3.84e-01 88.0% 76.2%
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.50 43.0 3.19e-01 94.9% 59.0%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980864 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.58 46.0 3.52e-01 85.5% 69.1%
5060093 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.57 34.0 4.00e-01 70.1% 90.5%
5065528 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.57 32.0 3.88e-01 81.2% 90.0%
3997815 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 50.0 3.38e-01 100.0% 89.6%
424930 5.1.3.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP 0.56 49.0 3.52e-01 100.0% 66.1%
3707878 5.1.2.33 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.55 48.0 3.67e-01 97.4% 80.7%
3955040 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.54 48.0 3.65e-01 96.6% 88.7%
3989984 2484.1.1.66 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.54 40.0 3.98e-01 77.8% 86.4%
5010025 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 36.0 3.58e-01 72.6% 65.0%
3278990 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 37.0 3.42e-01 72.6% 53.2%
3706802 5.1.3.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.53 46.0 3.42e-01 100.0% 68.8%
3487826 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 3.19e-01 100.0% 91.2%
4021757 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 45.0 3.25e-01 100.0% 84.4%
4965259 218.1.1.5 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MenC_N 0.52 32.0 3.41e-01 72.6% 71.0%
None — 0.52 46.0 3.37e-01 100.0% 83.8%
3807987 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.51 45.0 3.38e-01 100.0% 77.4%
3695979 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.51 43.0 4.35e-01 93.2% 90.6%
3300728 5.1.4.24 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SBP56 0.51 45.0 3.05e-01 100.0% 83.6%
3819893 5.1.4.288 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N 0.51 45.0 3.10e-01 100.0% 82.7%
6407 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.51 39.0 3.58e-01 82.1% 86.9%
None — 0.51 38.0 3.28e-01 79.5% 91.1%
3735486 5.1.4.221 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SGL 0.51 44.0 3.09e-01 96.6% 65.4%
4963523 7504.1.1.2 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T 0.50 37.0 3.27e-01 76.1% 77.6%
4050578 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.50 37.0 3.61e-01 75.2% 70.4%
4220848 2484.1.1.103 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tab2-like_N 0.50 38.0 3.05e-01 79.5% 75.7%
3939294 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 43.0 3.10e-01 98.3% 84.4%
3749143 243.3.1.20 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 0.50 37.0 3.68e-01 78.6% 72.8%
3628265 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 45.0 3.08e-01 100.0% 82.1%