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ON529857.1__USN15414.1__KIKIMORA_02680__00267

Bact-Vir

ON529857.1__USN15414.1__KIKIMORA_02680__00267

Identity

Accession:
ON529857 ↗
Kingdom:
phage

Quality

94.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Kikimoravirus› Brevundimonas_phage_vB_BpoS-Kikimora

TaxID: 2948601

Cluster

View cluster (27 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-99
PDB
Domain cluster: rep: NC_019408.1__YP_006989177.1__D869_gp284__00148__D4-95
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ng6A01 1.10.1510.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain 0.77 66.0 6.81e-01 99.0% 98.9%
3eabE00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.63 43.0 4.54e-01 73.2% 79.1%
3fhnA04 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.58 40.0 3.69e-01 77.3% 54.2%
2yhsA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.57 39.0 3.94e-01 70.1% 73.2%
4f92B10 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.57 42.0 3.67e-01 77.3% 78.3%
1rj1A00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.56 51.0 4.39e-01 99.0% 92.6%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.56 41.0 3.65e-01 75.3% 62.2%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.54 36.0 3.66e-01 93.8% 69.1%
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 43.0 3.03e-01 87.6% 70.4%
2ehwA00 6.10.140.1220 Special › Helix non-globular › Helix Hairpins › 0.53 41.0 3.88e-01 99.0% 69.6%
5ts9B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.53 36.0 3.12e-01 82.5% 42.2%
4c3eM00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.52 34.0 2.98e-01 100.0% 41.3%
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.51 44.0 4.09e-01 99.0% 75.8%
4rm7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 45.0 4.02e-01 99.0% 87.8%
1u7gA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.50 43.0 2.96e-01 99.0% 80.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973839 610.4.1.1 ↗ alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.84 69.0 5.99e-01 97.9% 59.0%
3386043 610.4.1.1 ↗ alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.79 67.0 5.82e-01 99.0% 61.4%
3178110 610.4.1.1 ↗ alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.77 67.0 5.56e-01 100.0% 55.8%
4262515 610.4.1.1 ↗ alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.76 67.0 6.64e-01 100.0% 92.0%
3742733 610.4.1.1 ↗ alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.74 62.0 6.27e-01 99.0% 90.8%
3652944 7088.1.1.1 ↗ alpha arrays › GPI-anchored protein › GPI-anchored protein › GPI-anchored protein › SPARK 0.62 39.0 3.20e-01 80.4% 33.9%
5057381 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.62 42.0 4.48e-01 73.2% 78.8%
4125854 601.25.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical 0.61 43.0 3.63e-01 73.2% 50.6%
3451722 3930.1.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.59 53.0 4.91e-01 100.0% 90.4%
3312652 633.21.1.18 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom 0.59 53.0 4.59e-01 99.0% 77.3%
3631847 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 43.0 3.64e-01 76.3% 63.2%
3724046 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 43.0 3.34e-01 76.3% 49.0%
3223244 150.1.1.104 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Piezo_THU9_anchor 0.56 50.0 4.41e-01 100.0% 82.8%
3625437 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.56 49.0 4.68e-01 100.0% 87.0%
3388607 603.1.1.105 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 0.56 40.0 3.99e-01 74.2% 82.0%
3626481 603.1.1.105 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 0.56 40.0 3.85e-01 74.2% 82.7%
4030246 545.1.1.1 ↗ alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27 › Pfg27 0.55 45.0 3.79e-01 90.7% 87.1%
5075639 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.54 49.0 4.38e-01 100.0% 86.7%
3923698 627.1.1.0 ↗ alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain 0.52 42.0 4.25e-01 90.7% 91.0%
2576218 150.1.1.84 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › IMEF_Flp 0.51 45.0 4.01e-01 97.9% 92.9%
3238550 3939.1.1.161 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › Mitofilin 0.51 40.0 3.43e-01 84.5% 74.8%
1930746 109.1.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.51 34.0 3.12e-01 100.0% 50.8%
3596578 3069.1.1.0 ↗ alpha arrays › BART › BART › BART 0.50 38.0 3.49e-01 80.4% 69.2%
3969597 5001.1.1.15 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TMR-DISM_7TM 0.50 44.0 3.43e-01 100.0% 84.0%
D2 high residues 106-155
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ng6A02 1.10.10.410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.77 65.0 6.34e-01 100.0% 86.0%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 59.0 5.48e-01 96.0% 93.5%
4jkzA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 54.0 3.66e-01 100.0% 25.7%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.65 53.0 4.51e-01 100.0% 67.0%
2doeA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.64 51.0 4.45e-01 100.0% 56.6%
4a8eA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.64 52.0 4.52e-01 100.0% 57.5%
6s6hA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 42.0 3.30e-01 100.0% 32.1%
1zv1A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.63 43.0 4.09e-01 72.0% 59.3%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.63 52.0 4.60e-01 100.0% 72.8%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.62 49.0 4.75e-01 98.0% 93.5%
3rcyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 50.0 3.82e-01 100.0% 36.2%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 42.0 3.46e-01 72.0% 72.8%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.61 49.0 4.32e-01 100.0% 70.9%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.60 48.0 4.17e-01 100.0% 64.8%
4pxhB00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.60 48.0 4.34e-01 96.0% 82.7%
1hr7C02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.59 46.0 3.20e-01 100.0% 64.0%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.49e-01 100.0% 93.2%
5zorA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 46.0 4.23e-01 98.0% 67.1%
1eqfA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.57 47.0 3.66e-01 100.0% 64.8%
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 49.0 3.57e-01 100.0% 69.9%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 46.0 3.73e-01 100.0% 45.5%
3q9dB01 1.20.58.1050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 46.0 3.97e-01 100.0% 59.6%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.56 45.0 3.44e-01 100.0% 39.5%
1zarA03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 45.0 3.81e-01 98.0% 84.5%
2dt7B01 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.56 45.0 4.37e-01 100.0% 81.4%
5ko4A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 44.0 3.67e-01 98.0% 78.2%
3oxfA05 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 41.0 3.73e-01 90.0% 72.0%
1a59A02 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.53 44.0 3.55e-01 100.0% 97.2%
1xaxA00 3.40.390.30 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › "Metalloproteases (""zincins""), catalytic domain" 0.52 42.0 3.17e-01 98.0% 97.9%
1r3dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 40.0 2.72e-01 100.0% 60.7%
3ufeA02 1.20.58.1950 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 34.0 3.42e-01 72.0% 75.5%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3489856 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 67.0 5.71e-01 100.0% 65.0%
4520087 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.74 62.0 5.09e-01 100.0% 57.0%
4093066 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.73 64.0 5.48e-01 100.0% 80.0%
3960575 610.4.1.0 ↗ alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain 0.71 58.0 4.19e-01 94.0% 36.0%
4969225 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.71 59.0 4.73e-01 100.0% 53.6%
5059724 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.70 58.0 4.86e-01 100.0% 60.0%
4994576 101.35.1.36 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF27234 0.70 61.0 5.54e-01 100.0% 72.5%
4927310 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.67 54.0 4.60e-01 100.0% 64.2%
5022298 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.65 49.0 4.30e-01 82.0% 90.7%
2807554 101.1.1.27 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DsrC 0.64 53.0 4.36e-01 100.0% 55.3%
4009124 639.2.1.5 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › PF27475 0.64 54.0 5.16e-01 98.0% 95.0%
5001330 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.61 51.0 4.04e-01 100.0% 43.5%
149135 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.61 49.0 3.95e-01 100.0% 43.2%
3966922 102.1.3.28 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › PF27805 0.60 49.0 3.75e-01 98.0% 41.4%
3579286 864.1.1.3 ↗ a+b two layers › DLC › DLC › DLC › Ground-like 0.60 49.0 4.47e-01 100.0% 90.7%
3185106 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.40e-01 100.0% 66.7%
3592617 864.1.1.0 ↗ a+b two layers › DLC › DLC › DLC 0.59 51.0 4.34e-01 100.0% 88.2%
4397211 162.1.1.1 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.59 46.0 3.73e-01 90.0% 91.4%
3391956 6103.1.1.1 ↗ alpha bundles › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain › Death domain-associated protein 6 histone binding domain › DAXX_hist_bd 0.59 46.0 3.31e-01 100.0% 28.9%
4563317 192.7.1.3 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N 0.56 48.0 4.12e-01 98.0% 85.0%
5050917 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.55 41.0 3.62e-01 84.0% 82.5%
3743165 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 47.0 3.56e-01 100.0% 45.6%
3805676 1128.1.1.13 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › PF30094 0.54 38.0 3.25e-01 78.0% 52.2%
3241490 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.53 42.0 3.43e-01 100.0% 44.5%
4445757 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.52 42.0 3.81e-01 96.0% 94.7%
3703267 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.52 46.0 3.50e-01 100.0% 89.2%
5077283 2004.1.1.79 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.52 44.0 2.89e-01 96.0% 26.5%
3929612 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.51 43.0 3.46e-01 100.0% 47.3%
4991137 7583.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › ARMT1-like_dom 0.51 43.0 2.92e-01 100.0% 47.0%
3930038 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 44.0 3.67e-01 100.0% 64.4%
5065059 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.51 44.0 4.05e-01 98.0% 81.5%