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ON529857.1__USN15455.1__KIKIMORA_03130__00308
Bact-VirON529857.1__USN15455.1__KIKIMORA_03130__00308
Identity
- Accession:
- ON529857 ↗
- Kingdom:
- phage
Quality
71.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Jeanschmidtviridae›
Kikimoravirus›
Brevundimonas_phage_vB_BpoS-Kikimora
TaxID: 2948601
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 56-112
Domain cluster:
representative
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yn5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 47.0 | 4.23e-01 | 100.0% | 50.6% |
| 4iauA01 | 2.60.20.10 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins | 0.69 | 39.0 | 3.53e-01 | 100.0% | 41.0% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.69 | 40.0 | 4.05e-01 | 100.0% | 56.1% |
| 5eh1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 45.0 | 3.83e-01 | 100.0% | 41.1% |
| 5mj6A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.66 | 43.0 | 3.88e-01 | 100.0% | 47.5% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.66 | 49.0 | 4.09e-01 | 100.0% | 45.9% |
| 2f1rA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 41.0 | 3.09e-01 | 82.5% | 24.3% |
| 3hvaA00 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.65 | 59.0 | 4.20e-01 | 100.0% | 58.6% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.65 | 48.0 | 4.09e-01 | 100.0% | 48.9% |
| 3zq5A03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.64 | 43.0 | 3.17e-01 | 87.7% | 26.1% |
| 1a21A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 45.0 | 3.86e-01 | 100.0% | 43.9% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.64 | 45.0 | 4.68e-01 | 100.0% | 86.0% |
| 6b9tF01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 39.0 | 3.07e-01 | 100.0% | 27.2% |
| 1o5uA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 39.0 | 3.39e-01 | 100.0% | 38.6% |
| 6hbzA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.64 | 57.0 | 4.12e-01 | 100.0% | 60.4% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.64 | 56.0 | 4.01e-01 | 100.0% | 46.1% |
| 6hxiA01 | 3.30.470.110 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.64 | 48.0 | 3.37e-01 | 100.0% | 24.1% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 47.0 | 4.54e-01 | 100.0% | 69.7% |
| 2qsdB02 | 3.50.100.10 | Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain | 0.63 | 41.0 | 3.78e-01 | 100.0% | 50.0% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.63 | 47.0 | 3.62e-01 | 100.0% | 35.3% |
| 1et9A01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.62 | 48.0 | 3.83e-01 | 100.0% | 43.6% |
| 3pjyA00 | 2.60.120.1140 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 | 0.62 | 41.0 | 3.19e-01 | 100.0% | 30.2% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 46.0 | 4.55e-01 | 98.2% | 76.7% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 44.0 | 4.70e-01 | 96.5% | 91.8% |
| 3b8fB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.60 | 48.0 | 3.59e-01 | 100.0% | 35.2% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 45.0 | 4.34e-01 | 100.0% | 71.2% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.59 | 52.0 | 4.13e-01 | 100.0% | 50.4% |
| 3loiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 40.0 | 2.91e-01 | 100.0% | 25.6% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.59 | 48.0 | 4.29e-01 | 100.0% | 63.0% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.59 | 43.0 | 3.84e-01 | 100.0% | 52.2% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.58 | 50.0 | 4.24e-01 | 100.0% | 58.3% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.57 | 40.0 | 3.77e-01 | 100.0% | 57.9% |
| 3vzbB02 | 2.60.200.40 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.57 | 49.0 | 3.46e-01 | 100.0% | 95.9% |
| 1yudA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 38.0 | 2.87e-01 | 70.2% | 72.3% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 45.0 | 3.62e-01 | 100.0% | 43.6% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.56 | 37.0 | 3.67e-01 | 100.0% | 63.9% |
| 4c92A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 49.0 | 3.78e-01 | 100.0% | 49.2% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.55 | 48.0 | 3.82e-01 | 100.0% | 77.5% |
| 1wmdA02 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 44.0 | 3.47e-01 | 100.0% | 42.7% |
| 3nwsA01 | 2.40.50.800 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 40.0 | 3.16e-01 | 86.0% | 68.1% |
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 44.0 | 3.36e-01 | 100.0% | 38.7% |
| 2z8lA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 43.0 | 3.61e-01 | 100.0% | 77.8% |
| 4ewfA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 41.0 | 2.69e-01 | 87.7% | 90.7% |
| 1ylnA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 44.0 | 3.62e-01 | 100.0% | 50.0% |
| 2piaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 44.0 | 3.70e-01 | 100.0% | 57.7% |
| 4uzgA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 45.0 | 3.34e-01 | 100.0% | 39.1% |
| 2k5cA00 | 3.10.20.830 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bifunctional heparan sulphate n-deacetylase/n-sulphotransferase | 0.52 | 39.0 | 3.58e-01 | 91.2% | 96.6% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.51 | 40.0 | 3.97e-01 | 100.0% | 85.0% |
| 7c2fB01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.50 | 39.0 | 3.49e-01 | 100.0% | 59.3% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1096061 | 3375.1.1.1 ↗ | beta barrels › Single-stranded DNA-binding protein DdrB › Single-stranded DNA-binding protein DdrB › Single-stranded DNA-binding protein DdrB › DdrB | 0.74 | 48.0 | 3.70e-01 | 96.5% | 29.7% |
| 3972526 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 62.0 | 5.87e-01 | 100.0% | 94.3% |
| 3590658 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 61.0 | 5.72e-01 | 100.0% | 90.0% |
| 3958896 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.69 | 50.0 | 4.94e-01 | 100.0% | 75.0% |
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.67 | 50.0 | 4.38e-01 | 100.0% | 52.2% |
| 3200355 | 72.1.1.0 ↗ | beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like | 0.66 | 45.0 | 3.85e-01 | 100.0% | 44.4% |
| 3622753 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.65 | 57.0 | 4.69e-01 | 100.0% | 89.5% |
| 5073723 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.64 | 42.0 | 3.36e-01 | 87.7% | 32.8% |
| 3588755 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 53.0 | 5.01e-01 | 100.0% | 83.8% |
| 4478186 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 46.0 | 5.02e-01 | 96.5% | 97.8% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.63 | 42.0 | 4.52e-01 | 100.0% | 88.9% |
| 4463006 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.62 | 42.0 | 4.61e-01 | 100.0% | 91.1% |
| 3227231 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.62 | 41.0 | 4.05e-01 | 100.0% | 63.5% |
| 5063433 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 45.0 | 4.78e-01 | 100.0% | 92.0% |
| 4954114 | 4203.1.1.0 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like | 0.61 | 48.0 | 4.74e-01 | 87.7% | 100.0% |
| 5025086 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.61 | 50.0 | 5.12e-01 | 98.2% | 94.5% |
| 5004476 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 46.0 | 4.41e-01 | 100.0% | 72.3% |
| 3258276 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.60 | 40.0 | 2.73e-01 | 100.0% | 17.3% |
| 4405873 | 223.2.1.33 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 | 0.60 | 40.0 | 3.22e-01 | 78.9% | 33.9% |
| 5053230 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 41.0 | 3.30e-01 | 82.5% | 34.2% |
| 4999705 | 4.1.2.2 ↗ | beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 | 0.60 | 53.0 | 4.44e-01 | 100.0% | 58.9% |
| 5015713 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.59 | 51.0 | 5.06e-01 | 100.0% | 93.3% |
| 224066 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.59 | 41.0 | 3.83e-01 | 100.0% | 57.1% |
| 4302032 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.57 | 45.0 | 4.40e-01 | 100.0% | 78.5% |
| 3959955 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.56 | 38.0 | 4.09e-01 | 100.0% | 91.1% |
| 4088209 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.56 | 45.0 | 4.38e-01 | 100.0% | 78.5% |
| 3197566 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.56 | 50.0 | 4.17e-01 | 100.0% | 79.0% |
| 3332345 | 7579.1.1.20 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LCAT | 0.56 | 47.0 | 2.86e-01 | 98.2% | 67.2% |
| 4660084 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.56 | 45.0 | 4.27e-01 | 100.0% | 73.9% |
| 4405359 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.55 | 48.0 | 4.46e-01 | 100.0% | 81.3% |
| 4476045 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.54 | 43.0 | 4.11e-01 | 100.0% | 74.3% |
| 3930427 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.54 | 40.0 | 3.91e-01 | 100.0% | 73.8% |
| 3941506 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.53 | 41.0 | 2.55e-01 | 86.0% | 16.1% |
| 3704667 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.53 | 46.0 | 2.84e-01 | 100.0% | 17.0% |
| 3988557 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.52 | 39.0 | 2.59e-01 | 82.5% | 87.0% |
| 3924084 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 44.0 | 3.79e-01 | 100.0% | 98.0% |
| 3749060 | 4357.1.1.5 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 | 0.52 | 45.0 | 4.07e-01 | 100.0% | 82.5% |
| 3390707 | 304.103.1.3 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › MMADHC | 0.52 | 45.0 | 3.25e-01 | 94.7% | 41.3% |
| 3711293 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 41.0 | 4.04e-01 | 93.0% | 92.3% |
| 4974211 | 4.1.1.485 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6897 | 0.52 | 39.0 | 3.90e-01 | 98.2% | 80.0% |
| 4959077 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 43.0 | 4.25e-01 | 100.0% | 100.0% |
| 3711355 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 43.0 | 4.41e-01 | 98.2% | 96.4% |
| 5041165 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.52 | 37.0 | 2.59e-01 | 75.4% | 79.4% |
| 3539015 | 4357.1.1.5 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 | 0.51 | 41.0 | 3.41e-01 | 100.0% | 57.3% |
| 3475266 | 7579.1.1.20 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LCAT | 0.51 | 41.0 | 2.60e-01 | 98.2% | 68.4% |
| 5033892 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 41.0 | 4.00e-01 | 100.0% | 83.1% |