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ON529857.1__USN15540.1__KIKIMORA_04220__00393

Bact-Vir

ON529857.1__USN15540.1__KIKIMORA_04220__00393

Identity

Accession:
ON529857 ↗
Kingdom:
phage

Quality

92.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-65
PDB
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.90 43.0 2.52e-01 76.8% 7.2%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.63 45.0 3.20e-01 76.8% 26.2%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.63 50.0 3.64e-01 89.3% 98.8%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.04e-01 94.6% 75.7%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 42.0 3.42e-01 73.2% 76.2%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 40.0 2.44e-01 71.4% 22.8%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 3.18e-01 78.6% 54.6%
6qdws00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.59 37.0 2.99e-01 82.1% 32.1%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.58 44.0 3.64e-01 85.7% 85.6%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.57 47.0 4.14e-01 92.9% 78.6%
4eo0A00 3.30.110.160 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.57 40.0 3.16e-01 73.2% 41.5%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.57 34.0 2.85e-01 100.0% 35.9%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 41.0 3.71e-01 83.9% 89.5%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.30e-01 82.1% 82.5%
5da9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 49.0 3.00e-01 100.0% 79.5%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 46.0 3.18e-01 100.0% 46.9%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 44.0 3.72e-01 94.6% 51.5%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.21e-01 80.4% 82.7%
6le1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 46.0 4.38e-01 100.0% 91.2%
4twbA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 42.0 3.30e-01 94.6% 88.8%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.25e-01 76.8% 66.7%
4abyD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 45.0 2.85e-01 94.6% 70.7%
1u9yA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 45.0 3.45e-01 100.0% 88.0%
3foeA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.54 32.0 3.01e-01 94.6% 47.8%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.54 46.0 3.45e-01 100.0% 57.9%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 47.0 3.94e-01 96.4% 94.6%
2c4kA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 42.0 3.22e-01 100.0% 72.5%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.53 43.0 4.08e-01 87.5% 86.4%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.53 47.0 3.49e-01 100.0% 63.6%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 39.0 3.41e-01 100.0% 49.5%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.03e-01 83.9% 40.8%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.52 45.0 3.24e-01 96.4% 34.0%
3lrtB01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 41.0 3.13e-01 92.9% 85.7%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.31e-01 83.9% 94.2%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.52 40.0 3.65e-01 89.3% 65.9%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.52 45.0 2.99e-01 98.2% 24.5%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.51 36.0 2.83e-01 78.6% 67.6%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 41.0 2.97e-01 100.0% 51.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.51 43.0 3.09e-01 96.4% 94.6%
5mp7A01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 39.0 3.07e-01 100.0% 82.1%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.50 42.0 3.67e-01 94.6% 68.5%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 43.0 3.52e-01 100.0% 55.4%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 45.0 3.71e-01 98.2% 78.6%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3783976 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.84 47.0 3.89e-01 89.3% 35.6%
3252037 109.3.1.20 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_4 0.74 43.0 2.94e-01 78.6% 17.8%
3924998 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.69 45.0 2.72e-01 94.6% 10.7%
3924318 6166.1.1.0 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 0.68 49.0 3.38e-01 76.8% 47.7%
3627409 6166.1.1.1 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.67 49.0 3.30e-01 76.8% 46.0%
3197950 256.1.1.0 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.66 31.0 3.49e-01 71.4% 53.3%
169012 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.66 55.0 3.96e-01 96.4% 98.8%
3804378 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.63 43.0 4.02e-01 73.2% 64.0%
4928248 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 46.0 3.41e-01 78.6% 62.3%
5052968 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.61 47.0 2.86e-01 82.1% 20.6%
3574069 604.12.1.62 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DuoxA 0.61 41.0 3.17e-01 94.6% 31.2%
3508428 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 47.0 3.24e-01 85.7% 66.1%
3519143 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.59 44.0 2.77e-01 82.1% 43.3%
3700547 109.4.1.22 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.58 47.0 2.67e-01 89.3% 10.8%
4002132 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 45.0 2.73e-01 82.1% 14.2%
5044892 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.58 39.0 3.15e-01 71.4% 63.5%
3794245 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.58 44.0 2.94e-01 82.1% 59.2%
3249715 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.57 40.0 3.20e-01 75.0% 76.0%
3960610 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 43.0 2.86e-01 92.9% 20.9%
3587631 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.57 47.0 3.45e-01 89.3% 52.9%
3285382 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 51.0 4.07e-01 100.0% 90.9%
3233305 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.56 47.0 4.32e-01 94.6% 82.7%
3934420 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.56 49.0 3.37e-01 100.0% 82.9%
2755218 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.56 49.0 3.34e-01 100.0% 41.7%
4274656 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.56 39.0 3.05e-01 76.8% 35.7%
5082895 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.55 45.0 3.48e-01 100.0% 87.3%
3618802 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.55 44.0 3.40e-01 98.2% 86.5%
4965204 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.55 48.0 3.72e-01 96.4% 70.8%
3781870 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.55 45.0 4.05e-01 100.0% 74.1%
5010819 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 2.86e-01 75.0% 44.7%
3939311 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 41.0 3.30e-01 82.1% 50.0%
4222853 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.54 46.0 3.61e-01 92.9% 80.0%
3480534 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 38.0 3.07e-01 75.0% 80.8%
3547409 604.1.1.153 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 0.54 46.0 3.08e-01 92.9% 79.5%
3923219 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.53 47.0 2.96e-01 100.0% 58.1%
3714022 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.53 40.0 4.01e-01 89.3% 81.7%
3502564 312.1.1.6 a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.53 36.0 2.74e-01 71.4% 75.5%
3985490 192.2.1.5 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.53 45.0 3.47e-01 94.6% 59.7%
3996344 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.52 40.0 3.98e-01 92.9% 91.7%
3998938 6110.1.1.1 alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.52 45.0 2.55e-01 92.9% 10.0%
5054779 2006.1.4.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN 0.52 47.0 3.53e-01 100.0% 58.6%
1834407 3218.1.1.1 a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain › Terminase_2 0.52 37.0 3.27e-01 73.2% 66.7%
3303720 3336.1.1.1 alpha complex topology › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › PRONE 0.52 46.0 2.78e-01 100.0% 27.2%
3644183 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 39.0 3.79e-01 92.9% 75.0%
3711556 304.9.1.136 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › CBP66_1st 0.52 42.0 3.63e-01 94.6% 81.1%
4958500 3261.1.1.0 a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb 0.51 38.0 3.72e-01 76.8% 81.7%
3798928 59.1.4.2 beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.51 46.0 2.71e-01 100.0% 33.3%
4025072 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 46.0 3.54e-01 94.6% 68.7%
4246264 2007.1.12.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › DHquinase_II 0.51 42.0 3.12e-01 98.2% 77.1%
4595166 5076.2.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.51 45.0 2.93e-01 94.6% 32.0%
4996402 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.50 42.0 3.54e-01 92.9% 76.8%
3821553 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.50 38.0 3.92e-01 85.7% 100.0%
3641694 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.50 40.0 3.39e-01 96.4% 50.5%
3501234 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.50 43.0 2.63e-01 96.4% 73.2%
1224463 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.50 35.0 3.70e-01 73.2% 83.7%