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ON529857.1__USN15580.1__KIKIMORA_04620__00433

Bact-Vir

ON529857.1__USN15580.1__KIKIMORA_04620__00433

Identity

Accession:
ON529857 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-86
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 52.0 4.11e-01 77.3% 49.6%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 50.0 4.02e-01 75.8% 44.3%
3g8zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 51.0 4.11e-01 77.3% 44.5%
1flgA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.70 63.0 3.63e-01 100.0% 17.9%
3qdkB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.69 49.0 3.24e-01 75.8% 93.0%
3dmcA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 54.0 4.28e-01 84.8% 44.0%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.69 53.0 3.62e-01 84.8% 23.4%
3sxxC01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 55.0 4.78e-01 87.9% 64.7%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 49.0 4.41e-01 77.3% 60.0%
4cvbA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.68 60.0 3.49e-01 100.0% 18.5%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.67 52.0 3.55e-01 84.8% 23.3%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 53.0 4.35e-01 87.9% 50.4%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 46.0 4.41e-01 78.8% 63.2%
4bbwA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.66 58.0 3.63e-01 100.0% 30.9%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.66 59.0 3.75e-01 100.0% 39.0%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 47.0 3.92e-01 80.3% 43.6%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 50.0 3.96e-01 83.3% 44.4%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 45.0 4.01e-01 80.3% 49.0%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.64 46.0 4.37e-01 78.8% 64.1%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.64 54.0 3.34e-01 100.0% 18.3%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.64 51.0 5.06e-01 89.4% 81.7%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 49.0 3.90e-01 86.4% 55.0%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 48.0 3.67e-01 84.8% 53.1%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 46.0 4.36e-01 81.8% 70.4%
2nn6B01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.61 44.0 3.13e-01 78.8% 83.3%
3gmvX00 3.10.450.730 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain 0.60 44.0 3.39e-01 78.8% 33.3%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 51.0 3.31e-01 100.0% 35.8%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.59 51.0 4.34e-01 100.0% 75.2%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.58 47.0 4.21e-01 98.5% 62.2%
2r2cB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 3.66e-01 78.8% 81.7%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.58 41.0 3.86e-01 78.8% 62.1%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 42.0 3.95e-01 80.3% 63.1%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 45.0 4.07e-01 93.9% 75.2%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.56 43.0 3.39e-01 84.8% 43.0%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.56 41.0 3.55e-01 77.3% 76.5%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 49.0 3.92e-01 100.0% 70.6%
3tghA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 41.0 2.72e-01 80.3% 88.3%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.56 39.0 4.01e-01 75.8% 87.3%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 48.0 4.23e-01 100.0% 83.5%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 45.0 4.09e-01 93.9% 95.8%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 46.0 3.60e-01 100.0% 70.2%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 38.0 3.18e-01 74.2% 82.8%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 43.0 3.20e-01 95.5% 72.9%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.54 44.0 3.65e-01 93.9% 94.5%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 39.0 4.08e-01 86.4% 85.0%
5i47B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 37.0 3.32e-01 72.7% 78.9%
3s95A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 40.0 3.65e-01 80.3% 83.0%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 39.0 3.06e-01 81.8% 94.0%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.53 37.0 3.86e-01 77.3% 91.5%
3ndaA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 42.0 3.35e-01 89.4% 70.5%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 41.0 3.80e-01 92.4% 93.5%
3f3zA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 41.0 3.89e-01 89.4% 91.5%
2ky6A00 2.40.290.30 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › Mediator complex subunit 25, ACID domain 0.51 43.0 3.30e-01 98.5% 62.7%
6le1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 35.0 3.48e-01 71.2% 91.2%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 43.0 3.87e-01 95.5% 84.0%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 40.0 3.22e-01 90.9% 85.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3865506 4210.1.1.3 a+b two layers › WGR domain › WGR domain › WGR domain › PF26166 0.79 72.0 5.98e-01 100.0% 62.7%
3484248 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.74 67.0 5.47e-01 100.0% 64.2%
3791220 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.74 66.0 5.38e-01 100.0% 62.1%
3924310 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.73 63.0 3.89e-01 100.0% 17.0%
3864513 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 54.0 4.39e-01 80.3% 43.2%
5080210 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.72 51.0 3.56e-01 84.8% 22.7%
4944962 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.71 52.0 4.56e-01 78.8% 53.0%
3575305 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.70 60.0 3.73e-01 100.0% 17.8%
4638995 71.1.1.15 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › UCP033729 0.69 51.0 3.64e-01 84.8% 26.8%
4545039 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.69 49.0 4.88e-01 77.3% 71.4%
4926997 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.69 47.0 4.05e-01 84.8% 44.8%
3591253 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.69 61.0 3.80e-01 100.0% 21.1%
3676609 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.69 54.0 3.53e-01 100.0% 19.0%
3939294 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 59.0 3.61e-01 100.0% 16.4%
3719566 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 60.0 3.91e-01 100.0% 23.0%
3932950 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 58.0 3.63e-01 100.0% 17.5%
3967804 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.67 49.0 4.19e-01 77.3% 62.9%
3707641 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 60.0 3.69e-01 100.0% 20.5%
1548777 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.67 52.0 3.55e-01 84.8% 23.3%
4953130 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.67 48.0 4.31e-01 89.4% 55.6%
3924939 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.66 57.0 4.84e-01 100.0% 76.5%
3355761 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.66 60.0 4.65e-01 100.0% 52.1%
4955671 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.66 58.0 5.45e-01 100.0% 86.3%
3228242 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.66 56.0 4.96e-01 100.0% 74.0%
3588750 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.65 46.0 4.44e-01 74.2% 68.0%
3983782 2484.1.1.119 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.65 49.0 4.40e-01 81.8% 79.8%
3592742 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 55.0 5.04e-01 100.0% 92.2%
3685128 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.65 56.0 3.25e-01 100.0% 14.5%
3983036 2484.1.1.119 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.64 49.0 4.95e-01 81.8% 84.6%
3923801 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 46.0 4.13e-01 89.4% 53.7%
3971310 71.1.1.13 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF1329 0.64 49.0 3.22e-01 84.8% 20.4%
3882965 5.1.4.13 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.64 55.0 3.32e-01 100.0% 24.5%
4628601 330.3.1.5 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › PF30110 0.63 56.0 5.03e-01 100.0% 75.3%
3988130 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.63 50.0 4.08e-01 87.9% 68.0%
3620132 5.1.4.224 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.63 54.0 3.35e-01 98.5% 27.0%
3945074 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 52.0 3.38e-01 95.5% 23.7%
3272565 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 54.0 3.38e-01 98.5% 26.7%
3322470 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.62 53.0 3.90e-01 100.0% 34.4%
3373744 5.1.4.241 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › eIF2A 0.62 55.0 3.35e-01 100.0% 21.4%
3955856 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.62 45.0 3.63e-01 77.3% 45.4%
3717759 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.62 43.0 3.55e-01 74.2% 43.2%
3718455 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.60 46.0 3.94e-01 86.4% 78.1%
3973605 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 42.0 4.23e-01 77.3% 73.5%
4045121 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.59 44.0 4.19e-01 81.8% 70.0%
4961805 295.1.1.55 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF26414 0.58 50.0 4.76e-01 100.0% 81.2%
3273247 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 48.0 3.85e-01 100.0% 46.0%
152844 243.3.1.8 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3889 0.58 41.0 3.86e-01 78.8% 62.1%
3723133 325.1.6.4 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PS_Dcarbxylase 0.57 41.0 2.93e-01 77.3% 40.4%
355233 274.1.1.4 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.57 41.0 3.88e-01 78.8% 62.5%
4928369 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 46.0 3.82e-01 100.0% 50.7%
3180499 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 42.0 2.75e-01 89.4% 26.1%
4375016 210.1.1.2 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Proteasome_A_N 0.54 42.0 2.98e-01 92.4% 64.3%
4827588 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 38.0 2.92e-01 75.8% 29.3%
5057921 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 41.0 2.91e-01 89.4% 37.5%
4981911 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 41.0 2.92e-01 90.9% 35.4%
5009292 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 35.0 2.51e-01 81.8% 20.0%
1420619 330.1.1.10 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.52 41.0 3.80e-01 92.4% 93.5%
5083094 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 39.0 2.77e-01 89.4% 37.2%
4355868 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.50 35.0 2.69e-01 89.4% 26.7%