←Back to structures

ON529860.1__USN15841.1__PAPPERLAPAPP_00990__00084

Bact-Vir

ON529860.1__USN15841.1__PAPPERLAPAPP_00990__00084

Identity

Accession:
ON529860 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Brevundimonas_phage_vB_BpoS-Papperlapapp

TaxID: 2948605

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-79
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.83 53.0 5.90e-01 74.0% 80.6%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.82 57.0 5.83e-01 72.7% 77.6%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.81 55.0 5.60e-01 70.1% 71.1%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 57.0 5.28e-01 72.7% 67.4%
2pihA00 1.20.1500.10 Mainly Alpha › Up-down Bundle › YheA-like fold › YheA/YmcA-like 0.79 56.0 4.70e-01 75.3% 46.3%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.79 57.0 4.63e-01 74.0% 46.2%
1k04A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.78 53.0 4.76e-01 70.1% 58.7%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 54.0 5.63e-01 72.7% 79.2%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.77 54.0 4.79e-01 72.7% 94.3%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.77 59.0 5.97e-01 96.1% 81.8%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.76 61.0 6.24e-01 98.7% 89.3%
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.76 61.0 5.11e-01 100.0% 51.5%
2yb5F01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.75 58.0 5.58e-01 100.0% 73.3%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 51.0 4.68e-01 74.0% 55.1%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.74 66.0 5.52e-01 100.0% 58.7%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.72 47.0 4.85e-01 75.3% 71.8%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.72 51.0 4.14e-01 74.0% 45.4%
3pjaJ01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.71 63.0 5.24e-01 96.1% 77.1%
3f1iH00 1.20.5.1940 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.71 51.0 4.66e-01 75.3% 58.2%
1b04A03 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 52.0 5.67e-01 100.0% 100.0%
2i9cA01 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.70 62.0 5.46e-01 96.1% 89.2%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 47.0 4.78e-01 72.7% 70.7%
6a7hA01 1.20.140.180 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.69 51.0 4.31e-01 85.7% 46.2%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 62.0 5.43e-01 98.7% 74.3%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.69 48.0 4.77e-01 72.7% 92.5%
2kc7A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 45.0 4.19e-01 100.0% 53.5%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.68 61.0 4.01e-01 100.0% 27.4%
2j9wB00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.68 63.0 5.70e-01 98.7% 87.9%
5z7qA00 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.67 62.0 4.66e-01 100.0% 59.1%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.67 45.0 4.27e-01 74.0% 56.8%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 60.0 5.84e-01 100.0% 92.9%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.67 46.0 4.80e-01 72.7% 78.9%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.67 45.0 4.67e-01 72.7% 76.1%
3caxA01 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.66 61.0 4.33e-01 100.0% 47.5%
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 59.0 4.40e-01 100.0% 70.5%
6xkyA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.65 57.0 4.37e-01 100.0% 58.3%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.65 54.0 5.00e-01 98.7% 72.2%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.63 55.0 5.32e-01 92.2% 94.1%
3urzA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 55.0 4.08e-01 98.7% 39.6%
2xl4A00 1.20.120.1420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › LntA helical domain 0.62 53.0 4.39e-01 100.0% 61.2%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.61 54.0 4.54e-01 100.0% 78.9%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 50.0 4.20e-01 88.3% 60.9%
6axfA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.60 51.0 4.48e-01 96.1% 62.4%
1z5zA02 1.20.120.850 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SWI2/SNF2 ATPases, N-terminal domain 0.60 46.0 4.64e-01 81.8% 100.0%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.59 50.0 4.48e-01 97.4% 71.9%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.59 47.0 4.51e-01 92.2% 75.8%
2b5dX02 1.20.1430.10 Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain 0.58 53.0 4.61e-01 100.0% 94.7%
3iqtA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.58 51.0 4.51e-01 100.0% 71.1%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 4.04e-01 93.5% 72.3%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 39.0 3.81e-01 85.7% 73.0%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3227967 616.1.1.2 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › WHEP-TRS 0.85 61.0 6.90e-01 85.7% 96.7%
3774553 223.2.1.22 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin 0.84 60.0 4.02e-01 74.0% 21.9%
3712319 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.82 59.0 4.35e-01 74.0% 31.7%
3273862 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.82 58.0 5.36e-01 72.7% 66.3%
3543972 109.4.1.1348 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_7, TPR_10, TPR_12 0.82 58.0 3.38e-01 72.7% 14.1%
4955780 3939.1.1.387 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › DUF4349 0.82 59.0 6.40e-01 74.0% 98.5%
4024277 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.81 58.0 5.96e-01 74.0% 85.3%
3737505 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.81 58.0 5.97e-01 74.0% 85.3%
5026881 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.81 58.0 5.93e-01 74.0% 85.3%
4956566 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.80 57.0 5.55e-01 74.0% 71.8%
4142346 5086.1.1.87 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.80 57.0 4.98e-01 74.0% 51.8%
5011532 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.79 57.0 5.27e-01 75.3% 66.3%
4979981 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.78 57.0 4.97e-01 75.3% 57.3%
4041347 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.77 56.0 4.89e-01 75.3% 70.0%
4024393 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.76 49.0 4.86e-01 70.1% 62.5%
3734918 109.4.1.681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.76 69.0 5.32e-01 100.0% 50.3%
3424167 3826.1.1.84 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF7797 0.76 56.0 5.58e-01 79.2% 75.0%
4983683 604.12.1.140 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF447_C 0.74 59.0 6.30e-01 96.1% 100.0%
3744696 603.1.1.2 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Not3 0.74 69.0 6.10e-01 100.0% 80.0%
3245731 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.73 62.0 6.17e-01 100.0% 90.0%
3712573 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.72 49.0 4.02e-01 72.7% 38.6%
3406218 604.7.1.0 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.72 55.0 4.86e-01 80.5% 88.2%
3310476 603.1.1.100 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.72 67.0 5.53e-01 100.0% 70.8%
4181721 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.72 67.0 5.60e-01 100.0% 84.8%
3250950 109.4.1.138 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PAT1 0.72 66.0 4.38e-01 98.7% 29.1%
3579534 192.29.1.144 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › SK_channel 0.72 67.0 4.94e-01 100.0% 67.0%
4956975 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.72 62.0 6.06e-01 100.0% 85.9%
3884815 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.72 51.0 3.62e-01 74.0% 27.1%
3487828 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.72 66.0 4.34e-01 100.0% 46.0%
1268387 604.1.1.6 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_4 0.71 66.0 5.77e-01 100.0% 80.7%
3924651 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.69 62.0 5.81e-01 100.0% 91.6%
3409714 604.3.1.1 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.68 58.0 5.38e-01 100.0% 74.0%
3838216 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.68 62.0 4.97e-01 100.0% 65.5%
5082746 604.12.1.143 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF26604 0.68 52.0 5.30e-01 92.2% 85.3%
4219465 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.67 46.0 4.15e-01 74.0% 50.0%
3601054 109.4.1.257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.67 54.0 3.04e-01 100.0% 6.7%
3678972 604.6.1.38 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › CASP_dom 0.66 59.0 5.24e-01 100.0% 86.2%
3570403 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.66 47.0 4.01e-01 74.0% 57.6%
4018811 603.1.1.158 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › KAR9 0.66 58.0 4.91e-01 100.0% 75.4%
4062183 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.65 47.0 4.75e-01 75.3% 93.3%
3620407 109.4.1.1350 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, HEAT_SCC3-SA, PF31007 0.65 57.0 3.19e-01 100.0% 7.8%
3792041 109.4.1.1407 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, HEAT_SCC3-SA 0.65 57.0 3.29e-01 100.0% 10.8%
3393869 604.6.1.2 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › ANTH 0.65 55.0 3.97e-01 100.0% 32.9%
5050139 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.65 46.0 4.69e-01 75.3% 93.3%
3717267 109.4.1.257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.64 55.0 3.07e-01 93.5% 20.0%
3181988 4336.1.1.5 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › HAM1_N 0.64 50.0 4.88e-01 88.3% 76.5%
3486748 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.64 56.0 5.10e-01 100.0% 87.6%
3766400 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.64 58.0 5.10e-01 98.7% 92.7%
4529712 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 46.0 4.30e-01 93.5% 60.0%
3718795 109.4.1.257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.64 55.0 3.23e-01 100.0% 17.5%
4960441 5076.2.1.18 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF6159 0.63 52.0 3.66e-01 90.9% 86.1%
3576710 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.61 53.0 5.17e-01 100.0% 90.6%
3947493 601.3.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.59 53.0 4.70e-01 100.0% 73.6%
3282241 191.1.1.1 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 0.52 40.0 3.39e-01 85.7% 50.7%