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ON529860.1__USN15963.1__PAPPERLAPAPP_02220__00206

Bact-Vir

ON529860.1__USN15963.1__PAPPERLAPAPP_02220__00206

Identity

Accession:
ON529860 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-58
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.79 55.0 4.41e-01 72.2% 40.6%
3p42A02 6.10.250.2280 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.75 52.0 4.71e-01 72.2% 88.6%
4yvoA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.74 59.0 4.56e-01 88.9% 51.3%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 49.0 4.52e-01 70.4% 88.7%
3wd6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.73 55.0 4.30e-01 83.3% 64.4%
2jx4A01 6.10.140.460 Special › Helix non-globular › Helix Hairpins › 0.72 48.0 5.06e-01 70.4% 79.2%
3w3uA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.71 55.0 3.00e-01 88.9% 6.4%
3ro3A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.70 57.0 4.15e-01 92.6% 37.7%
6qumA04 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.68 46.0 3.39e-01 72.2% 26.2%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.68 47.0 3.89e-01 74.1% 44.6%
4k0dA00 1.20.120.1730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.67 56.0 4.25e-01 100.0% 71.3%
2yv7A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 51.0 3.86e-01 85.2% 57.2%
4ui9Y03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 52.0 4.62e-01 87.0% 62.5%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.67 49.0 5.01e-01 83.3% 98.0%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.66 48.0 4.67e-01 79.6% 80.3%
2p61A00 1.20.120.490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain 0.65 55.0 4.45e-01 100.0% 67.5%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.65 43.0 3.73e-01 70.4% 42.4%
3fxdC00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.65 44.0 4.56e-01 72.2% 96.0%
3fhnA01 6.10.280.210 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain A 0.65 54.0 3.72e-01 92.6% 44.6%
6wy9B01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.65 54.0 4.34e-01 98.1% 81.9%
2i0mA02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.64 52.0 4.42e-01 98.1% 91.1%
1sjyA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.64 45.0 3.37e-01 77.8% 88.3%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.63 52.0 5.08e-01 96.3% 95.1%
2cwoA01 1.20.58.1200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain 0.63 49.0 4.49e-01 87.0% 100.0%
2o7tA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 50.0 3.53e-01 90.7% 70.3%
1vquA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.63 46.0 4.37e-01 81.5% 77.6%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.62 49.0 4.92e-01 92.6% 100.0%
3buxB01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.62 42.0 3.20e-01 70.4% 30.2%
2xrhA00 1.20.120.1430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HP0721 helical bundle 0.61 48.0 4.00e-01 88.9% 85.0%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 42.0 3.19e-01 74.1% 85.6%
3nynA03 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.60 49.0 4.35e-01 94.4% 76.5%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 45.0 3.38e-01 85.2% 82.1%
2ynqB00 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.58 47.0 3.51e-01 94.4% 39.1%
4agsB04 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 50.0 3.78e-01 98.1% 94.0%
3kjxD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 41.0 4.04e-01 77.8% 72.1%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.49e-01 81.5% 70.9%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 4.17e-01 77.8% 96.4%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.56 42.0 3.38e-01 85.2% 59.7%
4muoA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.56 38.0 3.58e-01 74.1% 58.3%
2fozA00 1.10.4080.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 0.56 46.0 2.90e-01 98.1% 27.4%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 38.0 3.50e-01 72.2% 84.5%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.55 48.0 4.11e-01 100.0% 64.0%
3d5lA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 4.01e-01 77.8% 96.2%
2acxA01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.54 43.0 3.10e-01 100.0% 33.2%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 39.0 3.76e-01 75.9% 95.0%
3id7A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.54 44.0 2.71e-01 100.0% 78.3%
1tzbA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.53 41.0 3.23e-01 98.1% 36.0%
4ht4A00 3.30.930.30 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › 0.52 43.0 2.95e-01 92.6% 51.5%
2qxlB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 43.0 3.28e-01 98.1% 47.0%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5050356 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.85 57.0 5.24e-01 70.4% 60.0%
3998166 109.4.1.56 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC8 0.82 67.0 4.87e-01 87.0% 39.3%
3316195 109.4.1.1269 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.81 65.0 4.59e-01 88.9% 33.3%
3873779 2004.1.1.463 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin, Kinesin_assoc, Microtub_bd 0.80 54.0 3.16e-01 70.4% 9.3%
3508475 109.4.1.145 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Paf67 0.80 66.0 3.92e-01 90.7% 21.1%
4954678 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.79 61.0 3.79e-01 83.3% 19.7%
4951033 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.79 56.0 3.62e-01 75.9% 16.7%
3660484 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.79 62.0 3.76e-01 85.2% 15.8%
3285588 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 58.0 4.68e-01 79.6% 44.2%
5049296 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.78 63.0 4.08e-01 87.0% 24.1%
4822508 3681.1.1.0 a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.78 53.0 4.60e-01 72.2% 47.0%
3610785 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.77 61.0 3.55e-01 87.0% 11.8%
3407907 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.77 57.0 3.95e-01 83.3% 24.6%
3258417 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.77 62.0 4.43e-01 87.0% 35.3%
3992675 109.4.1.313 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N 0.76 60.0 3.89e-01 88.9% 32.0%
3230694 1065.1.1.5 alpha bundles › SPX domain › SPX domain › SPX domain › DUF19 0.72 63.0 4.59e-01 100.0% 54.0%
3541625 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 55.0 3.91e-01 83.3% 29.6%
3719193 109.7.1.0 alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.70 55.0 4.88e-01 87.0% 65.0%
3877086 109.4.1.120 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Kinetochor_Ybp2 0.70 52.0 3.25e-01 81.5% 20.0%
3630143 109.4.1.1218 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EDRF1_N 0.69 58.0 3.65e-01 96.3% 28.3%
3706270 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.68 58.0 3.79e-01 100.0% 57.6%
3630263 7525.1.1.2 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.67 48.0 2.91e-01 75.9% 40.9%
3665770 1026.1.1.4 alpha bundles › Rev protein › Rev protein › Rev protein › Nup84_Nup100 0.67 54.0 4.16e-01 92.6% 60.8%
3612915 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 53.0 4.41e-01 94.4% 91.4%
3580289 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.65 53.0 4.21e-01 96.3% 77.6%
3786815 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.65 48.0 4.15e-01 85.2% 50.6%
3655113 109.4.1.777 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 54.0 3.65e-01 98.1% 53.2%
3783378 109.27.1.0 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.64 46.0 4.57e-01 83.3% 96.7%
4935668 601.33.1.1 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.64 54.0 4.20e-01 100.0% 80.8%
5051879 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.63 43.0 3.97e-01 72.2% 53.3%
5027811 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.62 53.0 5.01e-01 96.3% 100.0%
4927066 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.60 46.0 3.55e-01 85.2% 81.5%
3920080 109.4.1.14 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MyTH4 0.60 47.0 3.30e-01 94.4% 70.2%
4031354 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.60 41.0 3.88e-01 72.2% 58.6%
3488990 109.4.1.70 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.59 48.0 3.59e-01 94.4% 44.5%
3410378 109.4.1.2376 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GoLoco, TPR_7, TPR_12 0.59 50.0 3.30e-01 98.1% 20.8%
3993627 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 3.82e-01 74.1% 58.6%
5046473 601.3.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.59 47.0 4.07e-01 92.6% 65.6%
None 0.58 50.0 2.96e-01 100.0% 43.8%
5082325 3705.1.1.3 alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Phage_holin_6_1 0.58 42.0 3.93e-01 79.6% 84.3%
3488007 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 48.0 3.61e-01 100.0% 70.0%
3791819 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.56 39.0 3.39e-01 74.1% 48.8%
3510874 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.56 47.0 3.56e-01 94.4% 47.4%
3369678 7542.1.2.1 a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain II › Aconitase 0.54 42.0 3.45e-01 88.9% 60.9%
4538427 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.54 39.0 3.77e-01 83.3% 98.5%
3929606 5054.1.1.1 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan 0.53 36.0 2.78e-01 72.2% 55.6%
3639695 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.53 46.0 3.01e-01 100.0% 46.1%
4161600 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.52 37.0 3.89e-01 75.9% 100.0%
4480106 4954.1.1.1 a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.50 41.0 2.86e-01 94.4% 42.5%