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ON529860.1__USN16082.1__PAPPERLAPAPP_03410__00325

Bact-Vir

ON529860.1__USN16082.1__PAPPERLAPAPP_03410__00325

Identity

Accession:
ON529860 ↗
Kingdom:
phage

Quality

79.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Brevundimonas_phage_vB_BpoS-Papperlapapp

TaxID: 2948605

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-66
PDB
Domain cluster: rep: OK040790.1__UDL16018.1__SEA_PUMPERNICKEL_268__00227__D2-58
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.72 53.0 4.47e-01 100.0% 47.9%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 52.0 5.11e-01 98.3% 72.7%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.69 50.0 3.98e-01 100.0% 39.3%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 4.98e-01 96.7% 76.7%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 4.86e-01 96.7% 72.7%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 5.00e-01 93.3% 93.9%
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 44.0 3.69e-01 100.0% 43.3%
7p0eA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 44.0 3.72e-01 100.0% 45.5%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 44.0 3.61e-01 100.0% 42.9%
1r5tA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.58 49.0 3.68e-01 100.0% 39.0%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 48.0 3.55e-01 100.0% 35.5%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.50e-01 98.3% 88.7%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 3.84e-01 100.0% 58.7%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 47.0 3.83e-01 100.0% 47.0%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 47.0 3.50e-01 100.0% 37.3%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 45.0 3.33e-01 100.0% 32.7%
3hpeA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.56 48.0 3.57e-01 100.0% 90.9%
2x32A00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.55 48.0 3.47e-01 100.0% 90.2%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.60e-01 100.0% 50.0%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.54 50.0 3.54e-01 100.0% 39.6%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 48.0 4.11e-01 100.0% 96.9%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 3.52e-01 98.3% 52.1%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.54 40.0 3.19e-01 86.7% 93.8%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.53 49.0 3.45e-01 100.0% 39.4%
2lcjA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.53 40.0 2.93e-01 85.0% 95.7%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.53 45.0 4.03e-01 100.0% 75.6%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.53 45.0 3.85e-01 100.0% 60.6%
4b7lA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.13e-01 71.7% 89.0%
4govA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 44.0 3.51e-01 98.3% 96.2%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.69e-01 96.7% 60.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.94e-01 98.3% 81.5%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.51 41.0 3.53e-01 100.0% 52.3%
3zgzD04 2.20.28.290 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.51 37.0 3.70e-01 100.0% 75.8%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.51 44.0 3.34e-01 98.3% 73.3%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.50 39.0 3.19e-01 100.0% 45.1%
1zunB03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 41.0 3.59e-01 100.0% 67.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 35.0 3.58e-01 91.7% 79.7%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3319401 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.62 53.0 4.17e-01 100.0% 99.3%
4937158 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.46e-01 100.0% 78.3%
2083983 269.1.1.2 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C,Fib_alpha 0.61 54.0 3.44e-01 100.0% 47.2%
4190110 269.1.1.2 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C,Fib_alpha 0.61 54.0 3.31e-01 100.0% 38.6%
4103847 101.1.9.83 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.61 39.0 3.42e-01 100.0% 42.1%
3507385 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.60 54.0 3.68e-01 100.0% 62.2%
3911174 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.60 53.0 3.35e-01 100.0% 43.4%
4030011 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.60 49.0 4.39e-01 96.7% 75.6%
3396269 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.60 52.0 3.64e-01 100.0% 56.0%
3415498 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.60 52.0 3.43e-01 100.0% 48.5%
3786396 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.59 52.0 4.10e-01 100.0% 48.5%
3393354 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.59 52.0 3.58e-01 100.0% 53.0%
3409603 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.59 52.0 3.40e-01 100.0% 47.0%
3389696 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.59 52.0 3.30e-01 100.0% 40.6%
3730011 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.59 52.0 3.99e-01 100.0% 43.6%
5052022 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.58 50.0 3.69e-01 100.0% 36.7%
3407285 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.58 51.0 3.16e-01 100.0% 35.1%
3283639 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.58 49.0 3.85e-01 100.0% 94.5%
3990594 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.58 50.0 3.46e-01 100.0% 54.4%
4997604 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.57 42.0 3.17e-01 83.3% 91.2%
4976092 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 43.0 3.96e-01 100.0% 62.2%
3219409 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 48.0 4.23e-01 98.3% 80.0%
5048974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.06e-01 100.0% 57.3%
1878249 11.1.1.256 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PulA_N1 0.55 42.0 3.63e-01 98.3% 52.1%
5007278 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 37.0 2.94e-01 70.0% 68.5%
3184235 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.55 46.0 3.61e-01 100.0% 42.8%
3967986 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.55 48.0 4.43e-01 100.0% 75.0%
5055413 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.55 42.0 3.28e-01 100.0% 38.5%
4943244 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.55 41.0 3.07e-01 85.0% 95.3%
5029355 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.54 50.0 3.66e-01 100.0% 46.0%
3801941 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.54 40.0 3.36e-01 98.3% 43.5%
4070999 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.54 40.0 3.15e-01 86.7% 87.7%
4993853 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.54 50.0 3.52e-01 100.0% 40.6%
5062678 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.54 47.0 3.75e-01 98.3% 99.2%
4984220 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.53 48.0 3.51e-01 100.0% 41.9%
3273875 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.53 44.0 3.69e-01 95.0% 100.0%
3772640 10.21.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.52 45.0 3.53e-01 100.0% 45.6%
4335061 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.52 38.0 4.08e-01 100.0% 94.0%
2531595 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.52 38.0 4.03e-01 100.0% 92.2%
5031914 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.52 47.0 3.26e-01 100.0% 41.1%
4971412 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.51 46.0 3.25e-01 100.0% 44.4%
4487998 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.51 47.0 3.30e-01 100.0% 39.4%
3401719 269.1.1.0 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like 0.51 42.0 3.09e-01 98.3% 82.1%
3604439 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.51 39.0 2.93e-01 86.7% 94.1%
3391409 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 45.0 3.34e-01 100.0% 38.7%
3272450 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 42.0 3.44e-01 100.0% 50.0%
3971020 71.1.1.13 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF1329 0.51 44.0 2.77e-01 100.0% 73.4%
3819397 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.50 43.0 3.98e-01 100.0% 75.0%