←Back to structures
ON529861.1__USN16340.1__PLUTO_00240__00024
Bact-VirON529861.1__USN16340.1__PLUTO_00240__00024
Identity
- Accession:
- ON529861 ↗
- Kingdom:
- phage
Quality
84.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Lindbergviridae›
Plutovirus›
Luteibacter_phage_vB_LflM-Pluto
TaxID: 2948611
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-49
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10979.14 best | DUF2786 | 58.0 | 9.80e-16 | 90.9% | 97.5% |
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m1cB01 | 3.30.390.170 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.92 | 69.0 | 5.00e-01 | 88.6% | 32.1% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.92 | 75.0 | 5.16e-01 | 88.6% | 29.1% |
| 2rklF00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.91 | 73.0 | 6.90e-01 | 86.4% | 78.8% |
| 6humG01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.87 | 73.0 | 4.82e-01 | 90.9% | 25.6% |
| 2yjkC00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.87 | 71.0 | 4.78e-01 | 90.9% | 28.0% |
| 4lqxA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.86 | 69.0 | 4.08e-01 | 88.6% | 15.2% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.84 | 66.0 | 6.43e-01 | 86.4% | 100.0% |
| 4fvmA06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.84 | 67.0 | 6.58e-01 | 88.6% | 81.2% |
| 4gltA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.84 | 74.0 | 5.45e-01 | 100.0% | 82.5% |
| 1o9gA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.84 | 62.0 | 6.28e-01 | 88.6% | 81.4% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.84 | 67.0 | 4.55e-01 | 88.6% | 25.5% |
| 2vzbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.84 | 68.0 | 4.53e-01 | 90.9% | 25.1% |
| 4hfkB00 | 1.20.120.1620 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.83 | 74.0 | 5.65e-01 | 100.0% | 86.7% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.83 | 67.0 | 6.14e-01 | 90.9% | 70.7% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.82 | 66.0 | 5.63e-01 | 90.9% | 56.2% |
| 4hb1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.82 | 67.0 | 6.73e-01 | 90.9% | 90.9% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.82 | 61.0 | 5.59e-01 | 88.6% | 62.1% |
| 7zm7601 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.80 | 72.0 | 4.72e-01 | 100.0% | 64.1% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.80 | 63.0 | 4.74e-01 | 88.6% | 37.0% |
| 8befJ01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.80 | 72.0 | 4.71e-01 | 100.0% | 58.8% |
| 6xkyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.80 | 68.0 | 4.47e-01 | 100.0% | 57.8% |
| 4agsB04 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.79 | 68.0 | 4.86e-01 | 100.0% | 46.6% |
| 5cy5B00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.79 | 63.0 | 4.34e-01 | 88.6% | 26.2% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.79 | 63.0 | 5.21e-01 | 88.6% | 51.3% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.79 | 66.0 | 4.95e-01 | 100.0% | 77.8% |
| 3agtA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.79 | 66.0 | 4.75e-01 | 100.0% | 75.9% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.79 | 67.0 | 5.61e-01 | 100.0% | 58.2% |
| 1bbhA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.78 | 67.0 | 4.82e-01 | 100.0% | 87.0% |
| 5b1aC01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.77 | 62.0 | 5.40e-01 | 90.9% | 58.8% |
| 3rm5B02 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.75 | 59.0 | 3.75e-01 | 88.6% | 17.4% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.75 | 62.0 | 4.71e-01 | 93.2% | 46.7% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.74 | 59.0 | 5.01e-01 | 90.9% | 52.6% |
| 2pybA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.74 | 63.0 | 4.36e-01 | 100.0% | 34.4% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.73 | 65.0 | 5.20e-01 | 100.0% | 80.0% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.73 | 57.0 | 4.86e-01 | 88.6% | 54.1% |
| 2l6jA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.73 | 56.0 | 4.25e-01 | 88.6% | 36.9% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 53.0 | 4.74e-01 | 88.6% | 53.5% |
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.72 | 55.0 | 4.07e-01 | 88.6% | 31.0% |
| 5z7qA00 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.69 | 56.0 | 3.85e-01 | 100.0% | 67.6% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 52.0 | 4.77e-01 | 88.6% | 90.3% |
| 1a36A04 | 1.10.132.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.67 | 49.0 | 3.44e-01 | 88.6% | 22.3% |
| 1zymA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.67 | 52.0 | 3.87e-01 | 90.9% | 33.3% |
| 4i43B02 | 3.30.43.40 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain | 0.64 | 55.0 | 4.14e-01 | 100.0% | 46.5% |
| 1e9rA02 | 1.10.8.80 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain | 0.63 | 52.0 | 3.87e-01 | 90.9% | 46.0% |
| 3ut4A00 | 1.25.40.750 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Domain of unknown function DUF5071 | 0.63 | 50.0 | 3.75e-01 | 95.5% | 56.2% |
| 2zgyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.63 | 50.0 | 3.69e-01 | 97.7% | 64.3% |
| 1z6mA02 | 1.10.1200.90 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › DsbA-like domain | 0.62 | 47.0 | 4.22e-01 | 81.8% | 62.3% |
| 1aueB00 | 1.20.120.150 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain | 0.61 | 52.0 | 4.15e-01 | 100.0% | 84.0% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 51.0 | 4.87e-01 | 93.2% | 86.5% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2095477 | 1170.1.2.2 ↗ | beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) | 0.92 | 69.0 | 4.68e-01 | 88.6% | 25.2% |
| 3531615 | 601.48.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain | 0.90 | 78.0 | 6.96e-01 | 95.5% | 70.0% |
| 5054531 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.88 | 77.0 | 5.82e-01 | 97.7% | 43.0% |
| 3909630 | 601.48.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain | 0.88 | 78.0 | 6.45e-01 | 97.7% | 57.3% |
| 3725906 | 192.6.1.2 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATPD_C_fung | 0.88 | 72.0 | 7.24e-01 | 90.9% | 88.9% |
| 4127368 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.87 | 70.0 | 6.72e-01 | 88.6% | 78.0% |
| 5055939 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.87 | 70.0 | 4.65e-01 | 88.6% | 23.6% |
| 4590991 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.87 | 72.0 | 6.98e-01 | 90.9% | 83.3% |
| 5060007 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.86 | 78.0 | 5.39e-01 | 100.0% | 85.9% |
| 3879987 | 601.48.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain | 0.86 | 74.0 | 6.51e-01 | 97.7% | 66.2% |
| 3350314 | 109.4.1.927 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_LIN | 0.85 | 74.0 | 5.06e-01 | 97.7% | 44.8% |
| 5048061 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.84 | 66.0 | 6.19e-01 | 88.6% | 70.9% |
| 3858654 | 6067.1.1.0 ↗ | alpha arrays › Dimerization domain of Sgt2 › Dimerization domain of Sgt2 › Dimerization domain of Sgt2 | 0.83 | 72.0 | 4.28e-01 | 97.7% | 14.4% |
| 4465242 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.83 | 67.0 | 6.72e-01 | 90.9% | 88.9% |
| 3603633 | 3997.1.1.1 ↗ | alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › CobN-Mg_chel | 0.82 | 71.0 | 4.63e-01 | 100.0% | 36.8% |
| 3304304 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.81 | 71.0 | 5.36e-01 | 100.0% | 76.2% |
| 3385374 | 109.4.1.213 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FancD2 | 0.81 | 69.0 | 4.31e-01 | 100.0% | 21.3% |
| 3692552 | 5071.3.1.0 ↗ | alpha bundles › cytochrome bc1 complex 11 kDa protein-like › DUF465 › DUF465 | 0.80 | 62.0 | 5.56e-01 | 88.6% | 60.0% |
| 3987389 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.79 | 62.0 | 3.48e-01 | 90.9% | 8.1% |
| 4054690 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.78 | 61.0 | 6.16e-01 | 90.9% | 88.9% |
| 3345113 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.77 | 60.0 | 4.38e-01 | 90.9% | 30.8% |
| 3731364 | 3922.1.1.137 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › HisKA | 0.74 | 56.0 | 5.09e-01 | 88.6% | 60.0% |
| 3786480 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.73 | 60.0 | 4.13e-01 | 100.0% | 59.4% |
| 3616364 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.69 | 57.0 | 3.68e-01 | 100.0% | 77.0% |
| 5030379 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.68 | 54.0 | 4.30e-01 | 88.6% | 44.4% |
| 4357963 | 3718.1.1.1 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT | 0.68 | 56.0 | 4.54e-01 | 100.0% | 68.4% |
| 3783416 | 3730.1.1.0 ↗ | alpha arrays › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain | 0.67 | 53.0 | 5.03e-01 | 88.6% | 74.1% |
| 4671536 | 3718.1.1.1 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT | 0.67 | 52.0 | 4.22e-01 | 90.9% | 62.1% |
| 4230219 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.63 | 54.0 | 3.35e-01 | 100.0% | 18.0% |
| 3510272 | 101.1.1.213 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HRI2_3H | 0.62 | 52.0 | 4.44e-01 | 93.2% | 62.9% |
| 185993 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.61 | 51.0 | 4.60e-01 | 93.2% | 73.8% |
| 3744818 | 101.1.1.213 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HRI2_3H | 0.61 | 53.0 | 4.49e-01 | 97.7% | 64.0% |
| 4931233 | 4969.1.1.1 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B | 0.57 | 46.0 | 3.35e-01 | 100.0% | 86.2% |
D2
medium
residues 60-115
Domain cluster:
representative
CATH (78)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ug8A00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.67 | 50.0 | 4.39e-01 | 94.6% | 52.9% |
| 3d3sA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.67 | 59.0 | 4.26e-01 | 100.0% | 35.2% |
| 4wyqB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.67 | 48.0 | 4.40e-01 | 78.6% | 57.3% |
| 3jwhA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.65 | 55.0 | 3.83e-01 | 94.6% | 34.0% |
| 6blkC00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.65 | 55.0 | 4.06e-01 | 98.2% | 48.1% |
| 3hluA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 49.0 | 4.64e-01 | 100.0% | 67.1% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.64 | 54.0 | 5.00e-01 | 100.0% | 74.3% |
| 1dt4A00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.64 | 54.0 | 5.03e-01 | 100.0% | 79.5% |
| 1m0sA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 48.0 | 4.50e-01 | 100.0% | 66.7% |
| 3k2yA00 | 3.30.70.2330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 51.0 | 4.27e-01 | 94.6% | 97.1% |
| 1vx4407 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 47.0 | 4.43e-01 | 100.0% | 68.1% |
| 4xrpC01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 48.0 | 3.56e-01 | 92.9% | 35.4% |
| 3bm7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 53.0 | 4.38e-01 | 100.0% | 58.5% |
| 3r5gA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.61 | 54.0 | 3.71e-01 | 100.0% | 35.4% |
| 1xdzA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 48.0 | 3.31e-01 | 100.0% | 22.3% |
| 4dpoB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 52.0 | 4.37e-01 | 100.0% | 61.4% |
| 3mgjA00 | 3.30.70.2690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain | 0.60 | 52.0 | 4.44e-01 | 100.0% | 60.4% |
| 3gygC02 | 3.30.70.1410 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › yhjk (haloacid dehalogenase-like hydrolase protein) domain | 0.60 | 46.0 | 4.15e-01 | 94.6% | 58.7% |
| 2khdA00 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 52.0 | 4.28e-01 | 100.0% | 52.8% |
| 4dkjA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 48.0 | 3.13e-01 | 94.6% | 19.6% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 51.0 | 4.32e-01 | 100.0% | 60.2% |
| 2n8lA00 | 3.30.310.210 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.60 | 50.0 | 3.56e-01 | 100.0% | 29.3% |
| 3aawA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.60 | 47.0 | 3.48e-01 | 100.0% | 30.9% |
| 2dt9A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 48.0 | 4.38e-01 | 100.0% | 67.1% |
| 1zo0A00 | 3.40.630.60 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.59 | 45.0 | 3.60e-01 | 100.0% | 38.1% |
| 3eeeA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.59 | 50.0 | 3.56e-01 | 98.2% | 30.3% |
| 2anrA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 49.0 | 4.51e-01 | 100.0% | 72.5% |
| 2joqA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 45.0 | 4.26e-01 | 100.0% | 68.0% |
| 1y10B02 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.59 | 52.0 | 3.66e-01 | 100.0% | 32.2% |
| 2b25A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 45.0 | 3.25e-01 | 94.6% | 26.9% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 47.0 | 4.14e-01 | 100.0% | 58.9% |
| 1rjjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 49.0 | 4.06e-01 | 100.0% | 60.4% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 51.0 | 4.34e-01 | 100.0% | 59.6% |
| 3tebB00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.59 | 50.0 | 3.28e-01 | 98.2% | 97.3% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 50.0 | 4.19e-01 | 100.0% | 55.6% |
| 1ro5A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 43.0 | 3.08e-01 | 82.1% | 54.5% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 48.0 | 4.24e-01 | 100.0% | 65.2% |
| 1zbtA02 | 3.30.70.1660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 50.0 | 3.65e-01 | 100.0% | 38.0% |
| 3kkfA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 49.0 | 4.08e-01 | 100.0% | 59.0% |
| 2ei0A02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.58 | 43.0 | 3.21e-01 | 98.2% | 30.3% |
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 45.0 | 4.02e-01 | 94.6% | 72.5% |
| 3s1tA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 48.0 | 4.39e-01 | 100.0% | 70.0% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 46.0 | 4.25e-01 | 100.0% | 68.4% |
| 1nxiA00 | 3.30.70.970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like | 0.57 | 49.0 | 3.78e-01 | 100.0% | 44.7% |
| 4atnA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 46.0 | 3.34e-01 | 94.6% | 31.9% |
| 1sr4B00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.57 | 44.0 | 3.00e-01 | 92.9% | 34.1% |
| 3m05B01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 45.0 | 3.96e-01 | 100.0% | 57.6% |
| 3tf8B00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.56 | 48.0 | 3.34e-01 | 94.6% | 30.4% |
| 1b7yB05 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.56 | 47.0 | 3.29e-01 | 94.6% | 49.7% |
| 2nzcB00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.56 | 45.0 | 4.15e-01 | 98.2% | 92.6% |
| 3shpA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 47.0 | 3.40e-01 | 96.4% | 75.4% |
| 3cloC01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 43.0 | 3.16e-01 | 94.6% | 64.8% |
| 5ntdA02 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.55 | 48.0 | 3.02e-01 | 100.0% | 60.3% |
| 4oi3A00 | 3.30.70.3090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer | 0.55 | 45.0 | 4.15e-01 | 100.0% | 69.1% |
| 1ygyA04 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 44.0 | 4.09e-01 | 100.0% | 68.4% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.55 | 48.0 | 3.29e-01 | 100.0% | 73.6% |
| 5cw3C01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 41.0 | 3.15e-01 | 83.9% | 49.7% |
| 3o1lB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 46.0 | 4.06e-01 | 100.0% | 67.0% |
| 1sqhA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 41.0 | 3.17e-01 | 96.4% | 31.3% |
| 6k3lB02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 42.0 | 3.74e-01 | 96.4% | 56.0% |
| 2raaA00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.53 | 42.0 | 3.17e-01 | 100.0% | 30.9% |
| 3nrbB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 46.0 | 4.08e-01 | 100.0% | 69.9% |
| 2fgeA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.53 | 42.0 | 2.94e-01 | 100.0% | 31.6% |
| 5is2A01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 45.0 | 3.91e-01 | 100.0% | 63.7% |
| 6vh5C03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 43.0 | 3.85e-01 | 100.0% | 65.2% |
| 3dr6B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 39.0 | 2.91e-01 | 85.7% | 53.3% |
| 4c2mA09 | 3.30.70.2850 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 43.0 | 3.22e-01 | 100.0% | 79.3% |
| 2zzeA04 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.52 | 41.0 | 3.51e-01 | 85.7% | 77.9% |
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 42.0 | 3.83e-01 | 100.0% | 66.3% |
| 2qswA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 46.0 | 3.95e-01 | 100.0% | 63.3% |
| 2qmwA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 44.0 | 4.03e-01 | 100.0% | 75.3% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 44.0 | 3.90e-01 | 100.0% | 65.5% |
| 3cedA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 44.0 | 3.74e-01 | 100.0% | 58.2% |
| 4bhqA00 | 3.30.70.2830 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 38.0 | 3.29e-01 | 100.0% | 45.9% |
| 5zhhA02 | 3.40.190.80 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.51 | 41.0 | 3.35e-01 | 96.4% | 86.4% |
| 2rinA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 40.0 | 2.97e-01 | 96.4% | 30.3% |
| 1mc0A01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 39.0 | 3.05e-01 | 96.4% | 61.4% |
| 3ktwB00 | 3.30.56.30 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit | 0.50 | 42.0 | 3.65e-01 | 100.0% | 77.4% |
ECOD (90)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3671807 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.68 | 56.0 | 5.01e-01 | 100.0% | 65.0% |
| 4935371 | 327.11.2.87 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › FLAD1_M | 0.68 | 56.0 | 5.26e-01 | 100.0% | 75.7% |
| 4026240 | 328.6.1.2 ↗ | a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › RTC | 0.68 | 53.0 | 3.51e-01 | 100.0% | 19.3% |
| 3838607 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.66 | 54.0 | 4.05e-01 | 92.9% | 49.7% |
| 3385565 | 320.1.1.16 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › HP0268 | 0.66 | 50.0 | 4.61e-01 | 92.9% | 62.8% |
| 4512937 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.65 | 50.0 | 3.46e-01 | 91.1% | 23.3% |
| 3597277 | 328.6.1.0 ↗ | a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like | 0.65 | 53.0 | 3.54e-01 | 100.0% | 21.6% |
| 1265480 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.65 | 49.0 | 4.64e-01 | 100.0% | 67.1% |
| 4209274 | 328.6.1.1 ↗ | a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase | 0.64 | 51.0 | 3.46e-01 | 100.0% | 22.7% |
| 2559787 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.64 | 53.0 | 4.86e-01 | 100.0% | 79.0% |
| 4557109 | 2.21.1.1 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › SmpB | 0.64 | 51.0 | 3.97e-01 | 96.4% | 75.9% |
| 3598586 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.64 | 51.0 | 3.99e-01 | 100.0% | 40.0% |
| 3616172 | 304.162.1.2 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M | 0.63 | 53.0 | 4.79e-01 | 100.0% | 68.8% |
| 3750868 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.63 | 55.0 | 3.88e-01 | 100.0% | 32.2% |
| 3412059 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.63 | 54.0 | 4.50e-01 | 100.0% | 55.2% |
| 5021160 | 327.11.2.82 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 | 0.62 | 50.0 | 4.37e-01 | 100.0% | 56.7% |
| 3826015 | 387.1.5.15 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SLR1-BP | 0.62 | 54.0 | 5.04e-01 | 100.0% | 92.9% |
| 3480120 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.62 | 52.0 | 4.58e-01 | 100.0% | 64.4% |
| 3649210 | 101.1.9.2 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › SRP19 | 0.62 | 53.0 | 4.46e-01 | 100.0% | 71.0% |
| 4963469 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.62 | 49.0 | 4.21e-01 | 100.0% | 51.4% |
| 3108806 | 304.54.1.1 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC | 0.62 | 48.0 | 4.20e-01 | 100.0% | 54.9% |
| 5046778 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.62 | 50.0 | 4.26e-01 | 100.0% | 54.0% |
| 4111686 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.61 | 52.0 | 4.27e-01 | 100.0% | 53.6% |
| 3960152 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.61 | 51.0 | 4.02e-01 | 100.0% | 53.3% |
| 5012702 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.61 | 52.0 | 4.19e-01 | 100.0% | 49.6% |
| 3479702 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.61 | 50.0 | 4.26e-01 | 100.0% | 55.2% |
| 3928198 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 52.0 | 4.33e-01 | 94.6% | 68.4% |
| 3505041 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.61 | 51.0 | 4.22e-01 | 100.0% | 63.6% |
| 4951172 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.60 | 51.0 | 4.20e-01 | 98.2% | 55.2% |
| 5065934 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.60 | 49.0 | 4.41e-01 | 100.0% | 64.7% |
| 5013331 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.59 | 46.0 | 4.52e-01 | 98.2% | 80.0% |
| 5011607 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 43.0 | 3.28e-01 | 78.6% | 95.0% |
| 3590219 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.59 | 45.0 | 4.01e-01 | 100.0% | 55.6% |
| 3602142 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.59 | 48.0 | 4.06e-01 | 100.0% | 51.4% |
| 3196489 | 328.7.1.1 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain › Smr | 0.59 | 47.0 | 3.97e-01 | 96.4% | 50.0% |
| 3591554 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.59 | 44.0 | 4.15e-01 | 94.6% | 65.3% |
| 4345964 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.59 | 44.0 | 3.88e-01 | 100.0% | 51.6% |
| 3587356 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.59 | 44.0 | 3.93e-01 | 100.0% | 54.4% |
| 5022418 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.59 | 44.0 | 4.26e-01 | 100.0% | 73.8% |
| 4979991 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.59 | 47.0 | 4.07e-01 | 100.0% | 54.0% |
| 4402979 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 48.0 | 4.41e-01 | 100.0% | 70.7% |
| 5023211 | 310.3.1.25 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › DUF5402 | 0.58 | 47.0 | 3.88e-01 | 92.9% | 56.4% |
| 4664239 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.58 | 48.0 | 4.27e-01 | 100.0% | 62.2% |
| 3673542 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.58 | 48.0 | 4.63e-01 | 98.2% | 90.8% |
| 4974063 | 304.4.1.20 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 | 0.58 | 46.0 | 4.01e-01 | 100.0% | 54.7% |
| 5065805 | 304.8.1.22 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT | 0.58 | 46.0 | 4.13e-01 | 100.0% | 61.2% |
| 5057183 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.58 | 45.0 | 4.00e-01 | 100.0% | 55.8% |
| 3189996 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.58 | 48.0 | 3.21e-01 | 96.4% | 39.6% |
| 4939906 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 47.0 | 4.33e-01 | 100.0% | 70.7% |
| 5030783 | 242.1.1.3 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › Hom_end | 0.57 | 47.0 | 4.13e-01 | 100.0% | 58.9% |
| 5000388 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.57 | 46.0 | 4.16e-01 | 100.0% | 64.4% |
| 4954535 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.57 | 47.0 | 4.14e-01 | 100.0% | 60.0% |
| 4934181 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 47.0 | 4.28e-01 | 100.0% | 67.5% |
| 2886368 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.57 | 49.0 | 4.05e-01 | 98.2% | 60.4% |
| 4638999 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.57 | 43.0 | 3.94e-01 | 100.0% | 61.3% |
| 5075957 | 2003.1.5.42 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 | 0.57 | 43.0 | 2.87e-01 | 83.9% | 38.0% |
| 3802419 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.56 | 45.0 | 3.03e-01 | 94.6% | 21.7% |
| 3713805 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 43.0 | 2.74e-01 | 83.9% | 66.6% |
| 4944633 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 45.0 | 4.24e-01 | 100.0% | 73.3% |
| 3650582 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 45.0 | 4.31e-01 | 100.0% | 81.2% |
| 4202370 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.55 | 47.0 | 3.96e-01 | 100.0% | 56.0% |
| 4006594 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.55 | 46.0 | 4.11e-01 | 100.0% | 65.5% |
| 4973038 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.55 | 43.0 | 2.98e-01 | 87.5% | 86.3% |
| 3642333 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 40.0 | 2.89e-01 | 91.1% | 25.7% |
| 3642698 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.54 | 42.0 | 4.26e-01 | 100.0% | 90.9% |
| 3950550 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.54 | 46.0 | 4.16e-01 | 100.0% | 71.2% |
| 3164917 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.54 | 45.0 | 4.08e-01 | 100.0% | 68.8% |
| 3587830 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.54 | 41.0 | 3.73e-01 | 100.0% | 58.8% |
| 3941591 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 44.0 | 4.00e-01 | 100.0% | 80.0% |
| 5025196 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.54 | 43.0 | 3.98e-01 | 100.0% | 67.5% |
| 5052672 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 45.0 | 4.28e-01 | 100.0% | 80.0% |
| 2330628 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.53 | 47.0 | 3.34e-01 | 100.0% | 31.9% |
| 4067121 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.53 | 44.0 | 3.96e-01 | 100.0% | 64.7% |
| 5059392 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.53 | 43.0 | 3.15e-01 | 100.0% | 73.2% |
| 3485859 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.53 | 45.0 | 3.51e-01 | 100.0% | 71.5% |
| 5077256 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.53 | 41.0 | 3.05e-01 | 100.0% | 80.0% |
| 4017873 | 327.11.2.40 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF31052 | 0.53 | 40.0 | 3.77e-01 | 100.0% | 68.5% |
| 3839866 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.52 | 44.0 | 3.89e-01 | 100.0% | 73.3% |
| 3831199 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 42.0 | 3.62e-01 | 100.0% | 61.9% |
| 3804539 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 43.0 | 3.56e-01 | 100.0% | 49.1% |
| 5047663 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 37.0 | 2.77e-01 | 78.6% | 47.4% |
| 3394717 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.52 | 40.0 | 2.69e-01 | 98.2% | 75.2% |
| 4673811 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.52 | 43.0 | 3.80e-01 | 100.0% | 61.8% |
| 139586 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 44.0 | 3.91e-01 | 100.0% | 66.3% |
| 3821254 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.52 | 41.0 | 3.39e-01 | 100.0% | 52.0% |
| 5082698 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.52 | 40.0 | 3.61e-01 | 94.6% | 58.9% |
| 3571425 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.51 | 43.0 | 3.12e-01 | 100.0% | 32.7% |
| 5025980 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.51 | 40.0 | 3.66e-01 | 98.2% | 61.1% |
| 4994902 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.51 | 40.0 | 3.48e-01 | 98.2% | 55.2% |
| 3924671 | 304.8.1.71 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7636 | 0.50 | 40.0 | 3.53e-01 | 100.0% | 60.0% |
D3
medium
residues 116-236
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.62 | 38.0 | 3.78e-01 | 72.7% | 57.3% |
| 3ctwB00 | 1.10.8.930 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465 | 0.61 | 39.0 | 3.95e-01 | 89.3% | 65.0% |
| 1t72A01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.60 | 41.0 | 4.25e-01 | 70.2% | 71.8% |
| 4g80T00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.57 | 38.0 | 3.69e-01 | 78.5% | 59.7% |
| 6a95A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 36.0 | 3.57e-01 | 77.7% | 60.3% |
| 2oqmB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.55 | 41.0 | 3.64e-01 | 77.7% | 100.0% |
| 1rp3G02 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.54 | 38.0 | 3.62e-01 | 71.9% | 72.5% |
| 2kbwA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.54 | 32.0 | 3.00e-01 | 89.3% | 47.1% |
| 3x29A00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.52 | 41.0 | 3.71e-01 | 83.5% | 85.5% |
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.51 | 28.0 | 3.25e-01 | 78.5% | 74.7% |
| 1tfkB00 | 1.20.120.650 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Colicin D | 0.51 | 27.0 | 3.10e-01 | 81.0% | 69.8% |
| 8b70A01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.50 | 45.0 | 3.12e-01 | 100.0% | 46.4% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.81 | 77.0 | 6.68e-01 | 100.0% | 71.4% | |
| 3949582 | 327.11.2.48 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › DUF7168 | 0.81 | 76.0 | 5.96e-01 | 100.0% | 53.2% |
| 3499672 | 1203.1.2.13 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › Ribophorin_II | 0.66 | 55.0 | 5.09e-01 | 89.3% | 84.0% |
| 4993526 | 101.11.1.13 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › EMC6_arch | 0.63 | 35.0 | 4.02e-01 | 76.0% | 73.9% |
| 3499735 | 1203.1.2.0 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 | 0.63 | 52.0 | 4.67e-01 | 89.3% | 72.7% |
| 3231223 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.60 | 49.0 | 4.27e-01 | 86.8% | 74.4% |
| 4025583 | 636.1.1.0 ↗ | alpha arrays › SopE-like GEF domain › SopE-like GEF domain › SopE-like GEF domain | 0.60 | 44.0 | 3.75e-01 | 76.0% | 52.1% |
| 4010267 | 192.8.1.131 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › GNVR | 0.60 | 44.0 | 4.36e-01 | 79.3% | 72.3% |
| 4028588 | 4984.1.1.3 ↗ | alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › PFEMP, DBL_C | 0.58 | 46.0 | 3.29e-01 | 82.6% | 77.6% |
| 3596222 | 3930.2.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in endoribonuclease Dicer › Helical bundle in endoribonuclease Dicer | 0.58 | 39.0 | 4.19e-01 | 79.3% | 79.0% |
| 3372974 | 3684.1.1.2 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 | 0.58 | 45.0 | 3.51e-01 | 81.8% | 80.8% |
| 3596252 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.57 | 28.0 | 3.47e-01 | 71.1% | 73.8% |
| 3277303 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.57 | 43.0 | 3.65e-01 | 80.2% | 77.3% |
| 3347110 | 3684.1.1.2 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 | 0.57 | 45.0 | 3.60e-01 | 85.1% | 77.8% |
| 1682983 | 3998.1.1.1 ↗ | alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 | 0.56 | 32.0 | 3.69e-01 | 92.6% | 77.0% |
| 5039837 | 5069.1.1.15 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm | 0.56 | 46.0 | 3.91e-01 | 88.4% | 90.5% |
| 4980754 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.56 | 45.0 | 4.07e-01 | 86.0% | 84.8% |
| 3266646 | 109.4.1.900 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GNC1_N | 0.55 | 37.0 | 2.30e-01 | 89.3% | 11.7% |
| 3470995 | 109.4.1.470 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS2 | 0.55 | 41.0 | 2.83e-01 | 78.5% | 26.9% |
| 3689908 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.53 | 38.0 | 3.76e-01 | 73.6% | 80.0% |
| 3976441 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.53 | 39.0 | 3.88e-01 | 76.0% | 92.8% |
| 4235067 | 5086.1.1.142 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Clusterin | 0.52 | 38.0 | 3.30e-01 | 76.0% | 81.6% |
| 3740226 | 5051.1.1.7 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp | 0.52 | 42.0 | 2.87e-01 | 86.8% | 70.9% |
| 4169941 | 393.1.1.1 ↗ | few secondary structure elements › GLA-domain › GLA-domain › GLA-domain › Gla | 0.51 | 25.0 | 3.28e-01 | 91.7% | 82.9% |
| 3914665 | 604.5.1.10 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › HRG | 0.51 | 41.0 | 3.86e-01 | 84.3% | 70.8% |
| 4416476 | 1079.1.1.10 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Ycf1 | 0.50 | 46.0 | 3.83e-01 | 100.0% | 61.0% |