←Back to structures
ON529862.1__USN16500.1__POLUDNITSA_00850__00085
Bact-VirON529862.1__USN16500.1__POLUDNITSA_00850__00085
Identity
- Accession:
- ON529862 ↗
- Kingdom:
- phage
Quality
77.8
mean pLDDT
Taxonomy
TaxID: 2948607
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-50
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.82 | 62.0 | 5.20e-01 | 82.2% | 51.4% |
| 3rjvA02 | 1.25.40.740 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.80 | 63.0 | 5.59e-01 | 86.7% | 73.4% |
| 2xokP00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.75 | 56.0 | 4.80e-01 | 82.2% | 90.5% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.73 | 53.0 | 4.01e-01 | 82.2% | 32.1% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 53.0 | 4.53e-01 | 82.2% | 55.1% |
| 1vibA00 | 1.10.287.120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like | 0.71 | 51.0 | 4.89e-01 | 80.0% | 78.2% |
| 2scpA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.68 | 54.0 | 3.79e-01 | 100.0% | 37.4% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.67 | 53.0 | 4.47e-01 | 91.1% | 53.1% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 52.0 | 4.57e-01 | 88.9% | 74.6% |
| 2qkdA02 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.67 | 55.0 | 3.96e-01 | 97.8% | 46.4% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.66 | 53.0 | 4.22e-01 | 100.0% | 95.4% |
| 1ugoA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.66 | 47.0 | 3.84e-01 | 82.2% | 43.4% |
| 2iexA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.66 | 47.0 | 4.57e-01 | 80.0% | 68.6% |
| 2gk6A03 | 6.10.140.1240 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 46.0 | 4.48e-01 | 75.6% | 78.0% |
| 2i6hA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.65 | 50.0 | 4.08e-01 | 91.1% | 76.0% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.65 | 48.0 | 4.05e-01 | 86.7% | 71.3% |
| 4od8D00 | 6.10.140.1880 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 49.0 | 4.75e-01 | 86.7% | 80.4% |
| 2mx8A01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.63 | 43.0 | 3.43e-01 | 77.8% | 31.0% |
| 1y88A02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.62 | 48.0 | 4.42e-01 | 84.4% | 96.6% |
| 1u97A00 | 1.10.287.1130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › CytochromE C oxidase copper chaperone | 0.62 | 50.0 | 4.52e-01 | 100.0% | 69.6% |
| 2ygwA01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.60 | 51.0 | 3.62e-01 | 100.0% | 83.7% |
| 2wauA01 | 1.20.1310.20 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain | 0.59 | 46.0 | 3.22e-01 | 86.7% | 51.6% |
| 4pfyA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.55 | 46.0 | 2.89e-01 | 93.3% | 49.8% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.53 | 38.0 | 3.57e-01 | 82.2% | 65.6% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.52 | 38.0 | 3.56e-01 | 82.2% | 61.0% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3841658 | 604.10.1.12 ↗ | alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac › PF27853 | 0.87 | 66.0 | 4.87e-01 | 82.2% | 34.5% |
| 4108644 | 603.1.1.215 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27853 | 0.86 | 66.0 | 4.86e-01 | 82.2% | 34.5% |
| 4943339 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.86 | 63.0 | 4.74e-01 | 82.2% | 35.0% |
| 2893266 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.83 | 63.0 | 4.93e-01 | 82.2% | 62.0% |
| 3697877 | 3543.1.1.1 ↗ | alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › Gpr1_Fun34_YaaH | 0.80 | 62.0 | 3.95e-01 | 86.7% | 31.4% |
| 3619724 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.77 | 59.0 | 4.56e-01 | 84.4% | 57.0% |
| 3598441 | 109.4.1.1200 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_WDR35 | 0.77 | 67.0 | 5.16e-01 | 95.6% | 64.2% |
| 5001301 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.72 | 53.0 | 3.80e-01 | 80.0% | 33.3% |
| 4083064 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.72 | 51.0 | 4.98e-01 | 80.0% | 67.9% |
| 4156290 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.70 | 50.0 | 5.08e-01 | 82.2% | 84.4% |
| 4097875 | 3712.1.1.2 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › DUF412 | 0.68 | 49.0 | 3.97e-01 | 82.2% | 43.0% |
| 4882209 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.68 | 50.0 | 4.17e-01 | 82.2% | 44.7% |
| 3428914 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.68 | 51.0 | 4.85e-01 | 84.4% | 83.6% |
| 3851492 | 109.4.1.383 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI3K_1B_p101 | 0.68 | 54.0 | 3.43e-01 | 97.8% | 47.7% |
| 3683899 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.67 | 57.0 | 3.16e-01 | 95.6% | 12.0% |
| 4954895 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.67 | 52.0 | 4.24e-01 | 88.9% | 92.2% |
| 2708987 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.67 | 52.0 | 4.51e-01 | 88.9% | 86.7% |
| 3287592 | 3443.1.1.0 ↗ | alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain | 0.66 | 48.0 | 4.71e-01 | 84.4% | 88.0% |
| 3471579 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.64 | 45.0 | 3.87e-01 | 75.6% | 45.3% |
| 3226906 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.64 | 51.0 | 4.23e-01 | 91.1% | 51.8% |
| 4510293 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.63 | 45.0 | 3.85e-01 | 86.7% | 43.5% |
| 5010630 | 6132.1.1.0 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain | 0.63 | 44.0 | 3.87e-01 | 73.3% | 60.0% |
| 5024129 | 3390.1.1.0 ↗ | extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT | 0.63 | 46.0 | 4.66e-01 | 82.2% | 88.9% |
| 3238182 | 109.4.1.243 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zmiz1_N | 0.62 | 46.0 | 3.78e-01 | 93.3% | 81.0% |
| 4453951 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.61 | 43.0 | 4.03e-01 | 82.2% | 63.1% |
| 3641185 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.61 | 49.0 | 3.45e-01 | 100.0% | 45.4% |
| 3295707 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 43.0 | 4.40e-01 | 82.2% | 97.5% |
| 3744805 | 375.10.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol | 0.60 | 47.0 | 3.95e-01 | 91.1% | 51.8% |
| 4297580 | 3625.1.1.0 ↗ | alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain | 0.60 | 49.0 | 4.38e-01 | 100.0% | 75.7% |
| 3228078 | 614.1.1.12 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › C_tripleX | 0.56 | 41.0 | 4.27e-01 | 84.4% | 90.0% |
| 3285463 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.55 | 38.0 | 3.32e-01 | 82.2% | 43.3% |
D2
high
residues 57-134
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4p0dA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 43.0 | 3.75e-01 | 100.0% | 45.2% |
| 3f1sB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.64 | 42.0 | 3.94e-01 | 100.0% | 55.9% |
| 4g5aA00 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 41.0 | 3.76e-01 | 100.0% | 51.5% |
| 4h4nA00 | 2.60.40.3750 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 36.0 | 3.97e-01 | 87.2% | 72.6% |
| 1ut9A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 43.0 | 4.01e-01 | 100.0% | 61.2% |
| 2a74A02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.58 | 41.0 | 3.75e-01 | 100.0% | 57.4% |
| 2j73A00 | 2.60.40.1110 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 39.0 | 3.66e-01 | 100.0% | 56.3% |
| 2j1vA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 37.0 | 3.09e-01 | 100.0% | 38.3% |
| 1pjuA01 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.55 | 33.0 | 3.58e-01 | 100.0% | 73.0% |
| 2j9uB00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.54 | 33.0 | 3.76e-01 | 88.5% | 95.7% |
| 6fezA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 38.0 | 3.58e-01 | 100.0% | 60.6% |
| 3irzA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.72e-01 | 100.0% | 61.6% |
| 2h0eB00 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.54 | 42.0 | 3.80e-01 | 100.0% | 59.3% |
| 1rypK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.54 | 39.0 | 2.97e-01 | 76.9% | 91.4% |
| 1ltoA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 38.0 | 3.43e-01 | 100.0% | 53.2% |
| 5hccB02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.53 | 36.0 | 3.47e-01 | 100.0% | 58.9% |
| 1wscA01 | 3.30.700.20 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 | 0.53 | 45.0 | 3.61e-01 | 100.0% | 48.3% |
| 3r4rA01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 47.0 | 3.77e-01 | 100.0% | 68.5% |
| 5jtwA02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.52 | 35.0 | 3.29e-01 | 100.0% | 55.0% |
| 7sqxA02 | 3.30.70.2150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 40.0 | 3.79e-01 | 85.9% | 82.7% |
| 7uzsX03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 41.0 | 3.68e-01 | 100.0% | 62.6% |
| 3pjyA00 | 2.60.120.1140 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 | 0.50 | 44.0 | 3.78e-01 | 98.7% | 94.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4994168 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.69 | 42.0 | 3.72e-01 | 100.0% | 43.6% |
| 5081326 | 11.1.1.608 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail | 0.67 | 41.0 | 4.44e-01 | 100.0% | 73.8% |
| 3262234 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 43.0 | 3.63e-01 | 100.0% | 44.0% |
| 3210917 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 41.0 | 4.00e-01 | 100.0% | 62.4% |
| 3639662 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 44.0 | 4.43e-01 | 100.0% | 81.2% |
| 3927867 | 11.1.4.70 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO1-like_1st | 0.55 | 36.0 | 3.45e-01 | 100.0% | 57.8% |
| 3789849 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 37.0 | 4.09e-01 | 100.0% | 90.0% |
| None | — | 0.54 | 39.0 | 3.62e-01 | 100.0% | 59.0% | |
| 3470280 | 11.1.1.161 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TPPII | 0.54 | 39.0 | 3.33e-01 | 100.0% | 47.2% |
| 4979454 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 36.0 | 3.32e-01 | 100.0% | 50.9% |
| 3217851 | 302.2.1.0 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit | 0.53 | 47.0 | 4.15e-01 | 100.0% | 69.6% |
| 4250283 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.51 | 45.0 | 4.07e-01 | 96.2% | 85.7% |
| 4204478 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 40.0 | 3.72e-01 | 100.0% | 67.6% |