←Back to structures

ON529865.1__UTC30033.1__STASHLEY_00990__00100

Bact-Vir

ON529865.1__UTC30033.1__STASHLEY_00990__00100

Identity

Accession:
ON529865 ↗
Kingdom:
phage

Quality

74.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Brevundimonas_phage_vB_BpoS-StAshley

TaxID: 2948608

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-115
PDB
Domain cluster: rep: KX826077.1__APU03087.1__X__00012__D56-125
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 4.40e-01 87.1% 58.5%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.63 39.0 4.71e-01 71.8% 100.0%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.62 36.0 4.54e-01 80.0% 100.0%
1vw4X00 2.20.28.120 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Ribosomal protein L33 0.58 34.0 3.87e-01 77.6% 76.6%
2wp7A00 3.90.1720.30 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › PPPDE domains 0.55 46.0 3.87e-01 95.3% 96.8%
2pn0A02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.55 41.0 4.25e-01 78.8% 86.6%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.53 47.0 3.95e-01 97.6% 61.4%
4ekjA01 2.60.40.1500 Mainly Beta › Sandwich › Immunoglobulin-like › Glycosyl hydrolase domain; family 39 0.52 38.0 3.20e-01 80.0% 51.3%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.51 31.0 3.73e-01 80.0% 100.0%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.51 44.0 3.54e-01 96.5% 53.8%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4421311 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.86 65.0 5.87e-01 98.8% 60.9%
3838774 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.85 59.0 5.46e-01 98.8% 58.1%
3385437 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.84 60.0 5.68e-01 98.8% 63.0%
2392036 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.82 63.0 5.63e-01 98.8% 60.2%
4254576 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.81 60.0 5.60e-01 95.3% 65.0%
4554209 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.79 60.0 5.45e-01 98.8% 60.9%
3964437 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.78 60.0 5.47e-01 98.8% 61.8%
4486406 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.77 59.0 5.35e-01 100.0% 61.8%
4032331 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.76 62.0 5.53e-01 97.6% 63.5%
4083034 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.75 62.0 5.64e-01 100.0% 67.3%
4674798 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.75 60.0 5.42e-01 100.0% 64.5%
3988098 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.74 63.0 5.51e-01 98.8% 63.3%
3098472 375.1.1.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L33 0.63 39.0 4.60e-01 81.2% 92.9%
4086239 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 38.0 4.60e-01 82.4% 94.5%
3901437 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.62 42.0 4.85e-01 84.7% 100.0%
3884907 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 41.0 4.75e-01 81.2% 100.0%
3630527 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 41.0 4.62e-01 91.8% 93.8%
1949981 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 34.0 3.87e-01 77.6% 76.6%
4096587 3174.2.1.2 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › OrtA 0.57 45.0 4.52e-01 90.6% 95.6%
3470548 4004.1.1.5 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › DAGK_acc 0.56 44.0 3.27e-01 84.7% 96.8%
3511246 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.55 49.0 3.92e-01 96.5% 57.0%
3026658 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.54 48.0 3.91e-01 97.6% 99.4%
3964972 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.53 39.0 3.83e-01 78.8% 100.0%
3283906 618.1.1.3 ↗ a+b complex topology › DNA mimic protein DMP12-like › DNA mimic protein DMP12-related › DNA mimic protein DMP12-related › DUF7691 0.53 37.0 3.15e-01 75.3% 99.3%
3496161 508.1.1.1 ↗ a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.52 42.0 3.39e-01 88.2% 89.4%
3960377 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.52 40.0 4.13e-01 81.2% 96.2%
4124842 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.51 40.0 4.06e-01 85.9% 88.2%
3571064 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.50 33.0 3.40e-01 94.1% 69.4%
D2 high residues 118-171
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oyhA00 1.20.5.50 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.80 53.0 5.03e-01 70.4% 57.8%