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ON529867.1__USN16730.1__STRZYGA_00090__00009

Bact-Vir

ON529867.1__USN16730.1__STRZYGA_00090__00009

Identity

Accession:
ON529867 ↗
Kingdom:
phage

Quality

61.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-103
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wlzA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 45.0 4.00e-01 80.0% 56.2%
1fafA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.60 42.0 3.75e-01 74.5% 64.6%
1scmB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 38.0 3.66e-01 80.0% 55.9%
5lewA03 1.10.10.1600 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Bacterial DNA polymerase III alpha subunit, thumb domain 0.55 40.0 3.72e-01 80.0% 60.3%
1uklC00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.54 38.0 3.74e-01 89.1% 67.2%
3lnbA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.54 41.0 2.71e-01 83.6% 98.4%
3hz3A03 3.20.20.470 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glucansucrase 0.51 40.0 2.47e-01 96.4% 13.3%
5ohzA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.51 38.0 2.34e-01 85.5% 30.0%
3phuA01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 38.0 3.03e-01 94.5% 61.0%
7b7tA01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.50 41.0 3.09e-01 100.0% 33.5%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3909575 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.59 41.0 3.70e-01 80.0% 51.3%
3736218 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.59 38.0 3.38e-01 74.5% 42.4%
4025273 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 39.0 3.85e-01 78.2% 63.5%
3436400 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.57 40.0 3.69e-01 78.2% 56.2%
3593385 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.57 39.0 2.71e-01 74.5% 64.9%
3883765 376.1.2.17 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › LIM+PET 0.56 43.0 3.69e-01 92.7% 92.3%
3483773 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 38.0 2.86e-01 72.7% 34.3%
142171 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.54 41.0 2.71e-01 83.6% 98.4%
4994571 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.53 43.0 3.03e-01 98.2% 35.8%
4068492 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.53 39.0 3.99e-01 94.5% 81.8%
2605088 314.1.1.6 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.51 40.0 2.92e-01 92.7% 52.5%
3489801 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 37.0 3.28e-01 81.8% 53.3%
3251186 130.1.1.1 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.51 38.0 3.95e-01 90.9% 90.0%
D2 high residues 110-155
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06467.21 best zf-FCS 29.0 1.00e-06 87.0% 84.6%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tmaJ00 3.30.50.10 Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A 0.74 53.0 4.92e-01 97.8% 61.4%
2pptA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.73 50.0 5.49e-01 89.1% 89.2%
2wcyA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.73 48.0 4.07e-01 73.9% 41.3%
2w0tA00 3.30.60.160 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.73 54.0 5.62e-01 100.0% 86.0%
3p2aA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.66 48.0 5.26e-01 97.8% 100.0%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 45.0 2.61e-01 82.6% 93.8%
4p1mB01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.60 44.0 4.51e-01 100.0% 84.4%
6r9rA01 3.40.50.10640 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like 0.60 37.0 2.42e-01 80.4% 14.3%
2w8mA00 3.40.1350.50 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › D212 PD-(D/E)XK nuclease, catalytic motif 0.59 44.0 2.99e-01 80.4% 26.7%
6kykA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 46.0 3.92e-01 100.0% 50.0%
1rmdA02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.59 38.0 4.18e-01 100.0% 100.0%
6xwlE02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.58 42.0 3.11e-01 80.4% 29.9%
4ljiB00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.58 49.0 3.57e-01 100.0% 55.7%
2xocA01 3.30.40.140 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.57 44.0 3.79e-01 87.0% 59.0%
5yvxA00 3.30.40.100 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.57 45.0 4.14e-01 87.0% 70.0%
4gklA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 37.0 3.08e-01 89.1% 35.2%
5w5yB08 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.57 43.0 3.17e-01 87.0% 67.4%
5sviB00 3.30.40.100 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.56 42.0 4.08e-01 87.0% 73.6%
2mknA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 38.0 3.90e-01 100.0% 77.3%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.55 42.0 3.93e-01 82.6% 66.7%
1wjpA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 32.0 3.67e-01 97.8% 83.9%
2uvaG01 1.20.1050.120 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 43.0 3.16e-01 91.3% 46.3%
1t0fA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.54 44.0 3.11e-01 97.8% 49.4%
1e29A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.54 44.0 3.29e-01 100.0% 57.0%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 36.0 2.51e-01 71.7% 96.2%
1oeyA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 40.0 3.45e-01 100.0% 50.0%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.52 36.0 3.21e-01 76.1% 50.0%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.51 37.0 2.94e-01 84.8% 85.2%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 38.0 4.09e-01 97.8% 97.4%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.51 40.0 2.89e-01 87.0% 49.3%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.51 39.0 2.77e-01 87.0% 43.7%
4frfA00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.51 39.0 2.65e-01 93.5% 21.0%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004198 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.80 55.0 6.04e-01 93.5% 97.1%
4931448 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 62.0 6.04e-01 91.3% 80.0%
3260588 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.77 61.0 5.99e-01 91.3% 80.0%
5004690 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 53.0 5.71e-01 93.5% 97.1%
4155531 377.1.1.15 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YacG 0.73 54.0 5.32e-01 100.0% 72.0%
4960538 375.10.1.0 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.73 51.0 4.69e-01 89.1% 56.7%
4072720 375.6.1.1 few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › FlhC 0.71 47.0 5.26e-01 87.0% 91.4%
3368649 375.1.1.201 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_20 0.69 47.0 4.96e-01 89.1% 82.5%
3364037 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.69 45.0 4.83e-01 73.9% 88.6%
3605531 375.1.1.77 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 0.66 47.0 3.94e-01 95.7% 42.9%
3712524 375.1.1.77 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 0.66 45.0 4.30e-01 95.7% 60.0%
3322252 4952.1.1.3 alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › DUF1677 0.66 57.0 4.99e-01 100.0% 82.9%
3658113 857.1.1.16 a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › DUF1677 0.66 56.0 4.97e-01 100.0% 87.1%
3596419 375.1.1.77 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 0.66 47.0 4.90e-01 97.8% 95.0%
3596234 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 46.0 4.84e-01 95.7% 90.0%
4031664 375.1.1.75 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2197 0.65 52.0 5.54e-01 89.1% 100.0%
3362601 148.1.3.176 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF1677 0.64 54.0 4.95e-01 100.0% 92.3%
3941006 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.62 50.0 3.32e-01 95.7% 30.2%
3389022 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.62 42.0 4.13e-01 95.7% 66.0%
4964333 375.1.1.339 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7560 0.62 43.0 4.41e-01 97.8% 87.5%
3706365 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 47.0 4.66e-01 87.0% 96.0%
4962623 375.1.1.339 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7560 0.60 42.0 4.29e-01 97.8% 80.0%
4993539 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.60 42.0 2.83e-01 76.1% 25.6%
5041606 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 50.0 4.48e-01 95.7% 75.4%
4077203 107.1.1.10 alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrom_C550 0.59 50.0 3.64e-01 100.0% 54.1%
3998575 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 39.0 3.21e-01 100.0% 34.7%
4091699 857.1.1.1 a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA 0.58 42.0 3.40e-01 100.0% 38.0%
4544857 2007.2.5.3 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese, Rhodanese_C 0.58 42.0 2.87e-01 97.8% 19.0%
3641739 376.1.3.6 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-CW 0.56 43.0 4.12e-01 87.0% 87.3%
3611033 3681.1.1.0 a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.55 45.0 3.44e-01 95.7% 82.6%
3360654 376.1.3.57 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf_ULT1 0.55 42.0 4.02e-01 87.0% 87.3%
3029343 107.1.1.0 alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c 0.55 46.0 3.36e-01 100.0% 54.7%
3247756 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.54 45.0 3.10e-01 95.7% 89.1%
3471310 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 37.0 3.87e-01 100.0% 85.0%
3843654 386.1.1.112 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2HC_2 0.54 35.0 3.43e-01 95.7% 60.0%
3581484 3767.1.1.2 a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Dicer_platform 0.53 37.0 2.60e-01 78.3% 77.3%
4943767 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.53 41.0 3.31e-01 95.7% 74.5%
3922469 604.1.1.200 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Ima1_N 0.53 47.0 4.42e-01 100.0% 87.3%
3562527 386.1.1.358 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451 0.53 34.0 3.15e-01 93.5% 50.0%
2488070 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.53 42.0 4.01e-01 97.8% 75.0%
3557359 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 41.0 3.61e-01 100.0% 90.6%
3900575 386.1.1.69 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › AKAP95 0.51 37.0 3.54e-01 100.0% 65.5%
3654385 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.51 42.0 2.58e-01 97.8% 23.0%
3929103 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.51 41.0 3.89e-01 97.8% 83.3%
3491637 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 34.0 3.53e-01 97.8% 82.5%
3756763 593.1.1.0 alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.51 42.0 2.61e-01 97.8% 83.2%
3278307 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 42.0 3.05e-01 100.0% 44.1%
4037483 375.1.1.180 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › GlyRS_ins_1 0.50 41.0 3.68e-01 95.7% 85.7%