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ON529867.1__USN16770.1__STRZYGA_00490__00049

Bact-Vir

ON529867.1__USN16770.1__STRZYGA_00490__00049

Identity

Accession:
ON529867 ↗
Kingdom:
phage

Quality

84.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-47
PDB
Domain cluster: representative
CATH (63)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g5oA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.75 57.0 5.70e-01 87.8% 95.2%
1gsaA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.74 61.0 4.42e-01 100.0% 54.7%
3czbA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.73 61.0 4.14e-01 97.6% 99.4%
1amuA02 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.73 58.0 4.01e-01 90.2% 30.0%
2a6qA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.72 53.0 5.35e-01 87.8% 93.0%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.72 56.0 4.43e-01 90.2% 53.8%
2v3jA01 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.71 57.0 3.78e-01 100.0% 55.6%
1nrwA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.69 58.0 4.02e-01 100.0% 48.7%
7mi4A02 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.68 49.0 4.22e-01 82.9% 50.0%
1a79A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.68 53.0 4.11e-01 90.2% 49.0%
2q5iA03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.65 51.0 3.91e-01 100.0% 67.8%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.65 49.0 4.11e-01 90.2% 47.6%
5k2mA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 44.0 3.54e-01 75.6% 35.4%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.64 47.0 4.08e-01 87.8% 50.7%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.63 48.0 4.05e-01 100.0% 98.9%
3k3pA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 55.0 4.07e-01 100.0% 62.2%
2pvpA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 52.0 3.90e-01 100.0% 54.6%
4msxA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 51.0 4.07e-01 100.0% 77.4%
2gjwC01 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.61 45.0 3.34e-01 90.2% 30.7%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.61 50.0 3.96e-01 95.1% 59.1%
1yavB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 46.0 3.37e-01 92.7% 29.6%
4e69A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 49.0 3.02e-01 100.0% 17.1%
1pvmA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 47.0 3.29e-01 100.0% 38.2%
4qjiB00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.59 48.0 3.12e-01 100.0% 77.3%
2g5dA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.58 46.0 3.35e-01 92.7% 100.0%
7xnzA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.58 42.0 3.20e-01 90.2% 30.2%
1zfjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 45.0 2.64e-01 100.0% 15.5%
4nocD00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.58 42.0 3.13e-01 90.2% 29.3%
3ocmB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.58 42.0 3.12e-01 92.7% 28.8%
3fhmA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 44.0 3.31e-01 100.0% 50.0%
3lwbA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 50.0 3.70e-01 100.0% 45.5%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.57 48.0 4.75e-01 97.6% 100.0%
3i8nB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 44.0 3.36e-01 100.0% 50.8%
4hg0A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 42.0 3.09e-01 92.7% 28.6%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.57 46.0 3.22e-01 100.0% 26.5%
2yzqA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 43.0 3.33e-01 100.0% 51.2%
1gk3A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.57 44.0 2.96e-01 97.6% 63.3%
4yleA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 42.0 3.02e-01 87.8% 93.2%
3oi8A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 41.0 3.41e-01 87.8% 44.0%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 42.0 3.31e-01 100.0% 52.0%
5iipA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 43.0 3.38e-01 100.0% 52.6%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.56 46.0 4.31e-01 100.0% 81.8%
2vz8A06 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 44.0 2.71e-01 100.0% 28.1%
1vr9A02 3.10.20.750 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 41.0 3.94e-01 92.7% 100.0%
1gxlA02 3.30.70.1620 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 43.0 3.56e-01 97.6% 45.3%
3ddjA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 42.0 3.16e-01 100.0% 50.3%
6h1wA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 42.0 3.31e-01 100.0% 54.7%
3bc8A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 45.0 2.90e-01 100.0% 38.3%
1xkfB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 41.0 3.24e-01 100.0% 55.3%
4dqwA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 42.0 3.32e-01 100.0% 75.2%
3kpbA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 42.0 3.24e-01 100.0% 72.3%
3lhhA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 42.0 3.38e-01 100.0% 81.9%
1nf7A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 43.0 2.55e-01 100.0% 20.3%
2jroA01 3.30.1910.10 Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain 0.54 40.0 3.72e-01 97.6% 66.2%
3ocoA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 41.0 3.11e-01 100.0% 75.0%
3wwjA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.53 42.0 2.91e-01 100.0% 56.2%
3kh5A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 40.0 3.02e-01 100.0% 73.9%
3l2bA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 41.0 3.17e-01 100.0% 76.1%
3c1yA01 3.40.1700.10 Alpha Beta › 3-Layer(aba) Sandwich › YojJ-like (1 › DNA integrity scanning protein, DisA, N-terminal domain 0.53 41.0 3.04e-01 100.0% 92.8%
8gpsA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 38.0 3.08e-01 92.7% 39.3%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.51 38.0 2.55e-01 100.0% 48.8%
3i3wA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.51 35.0 3.02e-01 78.0% 50.0%
2iq1A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.50 40.0 2.63e-01 100.0% 66.1%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4945135 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.74 57.0 3.93e-01 90.2% 26.7%
None 0.71 61.0 3.56e-01 100.0% 12.4%
3624033 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.70 57.0 4.31e-01 100.0% 76.5%
3289828 2003.1.11.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like 0.68 49.0 3.50e-01 78.0% 27.7%
4991817 2007.1.11.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains 0.68 46.0 3.33e-01 73.2% 28.3%
3391759 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.67 57.0 3.91e-01 100.0% 34.0%
3394097 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.67 55.0 4.30e-01 100.0% 77.0%
4031100 282.1.1.0 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.66 50.0 4.39e-01 90.2% 57.1%
5064069 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.66 51.0 4.21e-01 87.8% 50.0%
4455670 2003.1.10.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.66 58.0 4.05e-01 100.0% 47.4%
5025497 300.1.1.6 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.65 53.0 3.73e-01 97.6% 80.7%
4007652 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.64 52.0 3.20e-01 100.0% 30.8%
4990414 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 51.0 3.63e-01 100.0% 62.1%
4522953 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.63 49.0 4.28e-01 90.2% 94.3%
4182855 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.63 50.0 4.34e-01 90.2% 90.8%
4153379 2492.1.1.18 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.63 50.0 3.62e-01 100.0% 37.9%
1879702 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.62 47.0 3.92e-01 100.0% 95.7%
3407118 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.62 51.0 3.38e-01 100.0% 38.4%
4863914 4020.1.1.1 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 0.62 45.0 3.05e-01 78.0% 58.4%
3696553 2004.5.1.0 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.62 49.0 3.41e-01 100.0% 71.9%
5011930 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.61 46.0 3.66e-01 100.0% 53.9%
4026396 5104.1.1.4 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › UPF0160 0.61 50.0 3.61e-01 100.0% 71.1%
138353 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.61 45.0 3.33e-01 92.7% 29.0%
1164586 2003.1.10.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.60 51.0 3.75e-01 100.0% 50.8%
4951217 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.60 44.0 3.36e-01 92.7% 32.0%
5054913 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 47.0 3.08e-01 87.8% 19.5%
3271282 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 44.0 3.23e-01 100.0% 55.0%
803 239.1.1.4 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › MltA 0.59 46.0 3.15e-01 92.7% 100.0%
5039505 3761.1.1.0 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.59 45.0 4.30e-01 100.0% 83.6%
4493865 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.59 43.0 3.61e-01 100.0% 97.0%
4961086 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 44.0 3.12e-01 100.0% 75.6%
5044840 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.56 43.0 2.77e-01 100.0% 29.7%
4042308 2003.1.10.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › GSH-S_N 0.56 45.0 3.24e-01 92.7% 30.4%
1031342 874.1.1.1 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.56 43.0 2.85e-01 97.6% 19.0%
3998536 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 41.0 3.05e-01 92.7% 30.0%
2577268 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 42.0 3.27e-01 100.0% 52.8%
3786840 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 42.0 3.09e-01 100.0% 41.9%
5045281 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 44.0 3.24e-01 100.0% 65.2%
4933559 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.55 42.0 3.34e-01 100.0% 54.8%
1087109 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.55 41.0 3.87e-01 92.7% 75.0%
3987965 874.1.1.1 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.55 43.0 2.62e-01 97.6% 11.4%
4948577 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 40.0 2.78e-01 92.7% 24.6%
3939451 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.53 41.0 3.19e-01 100.0% 76.7%
4077483 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.53 41.0 3.56e-01 95.1% 100.0%
4950977 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.52 38.0 2.94e-01 100.0% 45.7%