←Back to structures

URC16759.1

Arc-Vir

ON548425__URC16759.1__X__00005

Identity

Accession:
ON548425 ↗
Protein ID:
URC16759.1 ↗
Kingdom:
archaea

Quality

80.9 mean pLDDT

Taxonomy

Helarchaeota_virus_Nidhogg_Meg22_1012

TaxID: 2946032

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-51
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.71 54.0 4.69e-01 88.1% 53.8%
1a0rP02 1.10.168.10 Mainly Alpha › Orthogonal Bundle › Phosducin; domain 2 › Phosducin, domain 2 0.71 42.0 3.86e-01 95.2% 45.3%
7lv8A01 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.69 53.0 4.49e-01 95.2% 52.4%
1ygpA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.67 53.0 3.13e-01 88.1% 18.4%
1id3G00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.67 56.0 4.28e-01 100.0% 46.3%
3nv6A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.67 54.0 3.17e-01 100.0% 10.6%
3bezA02 3.40.1750.10 Alpha Beta › 3-Layer(aba) Sandwich › peptide peptidase (sppa) fold › peptide peptidase (sppa) like domain 0.66 56.0 4.32e-01 97.6% 91.8%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.64 52.0 3.82e-01 100.0% 47.4%
7xhlD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.64 51.0 3.15e-01 95.2% 74.5%
1hr7C02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.64 53.0 3.42e-01 100.0% 46.7%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.62 49.0 4.39e-01 100.0% 61.5%
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.61 51.0 4.48e-01 97.6% 70.8%
3sdgA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 37.0 3.74e-01 71.4% 71.4%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 45.0 2.90e-01 95.2% 50.2%
1u0mA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 41.0 2.89e-01 88.1% 46.6%
3lsgA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.51 35.0 3.20e-01 71.4% 54.5%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3792797 2003.1.6.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.79 69.0 4.60e-01 100.0% 46.9%
4120848 101.1.1.310 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0137 0.74 60.0 4.15e-01 97.6% 26.2%
5023752 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.72 57.0 4.86e-01 95.2% 52.0%
3732446 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.69 59.0 5.78e-01 97.6% 91.1%
3739367 1002.1.1.1 ↗ alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.66 55.0 3.91e-01 97.6% 34.1%
3635114 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.57 44.0 3.93e-01 100.0% 65.3%
3429101 101.1.1.269 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF7769 0.57 49.0 4.75e-01 100.0% 89.8%
3243112 367.1.1.2 ↗ few secondary structure elements › Insulin-like › Insulin-like › Insulin-like › Ins_beta 0.56 40.0 3.98e-01 81.0% 73.3%