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URC17100.1

Arc-Vir

ON548427__URC17100.1__X__00025

Identity

Accession:
ON548427 ↗
Protein ID:
URC17100.1 ↗
Kingdom:
archaea

Quality

74.2 mean pLDDT

Taxonomy

Lokiarchaeota_virus_Ratatoskr_Meg22_1012

TaxID: 2946036

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-38
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.89 77.0 5.33e-01 100.0% 93.4%
6v55A01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.65 51.0 3.75e-01 100.0% 31.2%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.63 48.0 4.39e-01 100.0% 62.3%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 47.0 4.00e-01 100.0% 79.7%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.61 45.0 3.99e-01 100.0% 56.3%
2amhA00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.60 44.0 2.84e-01 86.5% 15.4%
3jr7A02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.57 47.0 4.73e-01 100.0% 100.0%
6cngA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.56 47.0 4.71e-01 100.0% 100.0%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 42.0 3.87e-01 100.0% 67.8%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.55 41.0 2.99e-01 100.0% 52.5%
2j82A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 38.0 2.59e-01 100.0% 37.6%
3fdjA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.53 42.0 4.27e-01 100.0% 100.0%
2rikA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.22e-01 100.0% 50.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3551383 2006.1.3.3 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim,TOPRIM_C 0.87 77.0 4.50e-01 100.0% 12.8%
3213306 2006.1.3.21 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOPRIM_C 0.86 75.0 4.43e-01 100.0% 13.7%
None — 0.84 71.0 4.29e-01 100.0% 15.1%
3789608 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.84 73.0 4.31e-01 100.0% 13.5%
4878011 2006.1.3.21 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOPRIM_C 0.82 66.0 4.06e-01 100.0% 16.0%
5062217 4012.1.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.81 66.0 5.88e-01 100.0% 63.6%
4406660 2006.1.3.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim 0.80 67.0 4.08e-01 100.0% 15.4%
4100838 2006.1.3.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim 0.76 59.0 3.72e-01 100.0% 15.6%
4531584 4012.1.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.73 60.0 5.91e-01 100.0% 92.5%
3297748 4076.1.1.2 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI 0.72 59.0 5.34e-01 100.0% 67.3%
3738773 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.69 54.0 5.00e-01 100.0% 78.2%
4958377 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.66 52.0 4.99e-01 100.0% 77.1%
3772534 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.64 48.0 3.97e-01 100.0% 41.2%
4011099 376.1.1.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.60 44.0 3.91e-01 100.0% 50.8%
4981878 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 39.0 3.49e-01 94.6% 75.7%
3666584 221.1.1.68 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ATG5_UblA 0.53 37.0 3.24e-01 94.6% 72.5%
4864462 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 37.0 2.95e-01 100.0% 32.4%