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URC17130.1

Arc-Vir

ON548427__URC17130.1__X__00055

Identity

Accession:
ON548427 ↗
Protein ID:
URC17130.1 ↗
Kingdom:
archaea

Quality

55.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-59_150-193
PDB
D2 high residues 85-132
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kkiA02 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.69 54.0 4.32e-01 89.6% 68.3%
3ktaA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 58.0 4.00e-01 97.9% 51.8%
2fipA00 3.30.70.3560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phi-29-like late genes activator, P4 0.67 51.0 3.85e-01 83.3% 70.4%
6qpwA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 57.0 4.05e-01 100.0% 45.1%
4i99A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 56.0 3.45e-01 100.0% 27.3%
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.64 45.0 3.28e-01 77.1% 24.3%
1ckeA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 54.0 3.59e-01 100.0% 40.6%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.63 50.0 3.54e-01 91.7% 63.9%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.63 44.0 3.61e-01 75.0% 53.9%
1w1wA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 50.0 3.24e-01 100.0% 23.7%
8a5eD01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 49.0 4.30e-01 97.9% 63.3%
2kloA00 1.10.10.1420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain 0.58 37.0 2.69e-01 89.6% 22.5%
1darA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 47.0 3.06e-01 97.9% 85.3%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.58 36.0 3.09e-01 77.1% 34.1%
3akcA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 48.0 3.24e-01 100.0% 31.7%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.57 43.0 3.57e-01 85.4% 45.3%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 38.0 2.81e-01 70.8% 30.0%
6n59A02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 46.0 3.94e-01 95.8% 58.3%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.56 44.0 3.64e-01 100.0% 90.7%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.56 46.0 3.73e-01 97.9% 85.4%
7yj5A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.56 44.0 3.15e-01 89.6% 48.4%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.56 35.0 3.03e-01 100.0% 39.2%
7bgsA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 45.0 3.55e-01 100.0% 82.4%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.09e-01 87.5% 35.7%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.55 45.0 3.33e-01 100.0% 56.5%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 34.0 2.87e-01 100.0% 36.1%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 3.92e-01 89.6% 86.2%
4nogA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 42.0 3.12e-01 97.9% 51.5%
1iv8A02 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.54 38.0 3.01e-01 77.1% 41.5%
3jtnB00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 42.0 3.59e-01 93.8% 51.1%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.54 44.0 3.82e-01 100.0% 58.4%
2h21B01 3.90.1410.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 0.54 40.0 2.57e-01 83.3% 38.4%
7x0fA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 43.0 3.16e-01 93.8% 75.0%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 39.0 2.87e-01 87.5% 26.8%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 39.0 3.62e-01 87.5% 61.8%
1mkyA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 2.95e-01 91.7% 86.8%
8p5sA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.52 42.0 2.75e-01 93.8% 71.2%
2eo5A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 42.0 3.07e-01 95.8% 32.4%
1iugA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 41.0 3.28e-01 95.8% 49.5%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 40.0 3.73e-01 93.8% 71.2%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 38.0 3.16e-01 91.7% 82.4%
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 40.0 2.35e-01 100.0% 9.8%
3h5aD01 3.90.930.70 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.51 38.0 3.28e-01 87.5% 88.6%
3ruyA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 40.0 3.04e-01 97.9% 54.5%
3qwuA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 35.0 3.52e-01 75.0% 93.6%
7npaA02 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 35.0 3.03e-01 87.5% 43.5%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5024884 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 4.46e-01 89.6% 48.2%
4026040 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.68 59.0 3.32e-01 97.9% 14.5%
3518548 2004.1.1.80 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.66 47.0 3.25e-01 77.1% 26.6%
4031639 241.7.1.1 a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N 0.64 55.0 4.52e-01 97.9% 86.7%
4026560 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.64 53.0 4.37e-01 100.0% 54.0%
4424957 3804.1.1.0 alpha bundles › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain 0.64 47.0 3.30e-01 89.6% 22.8%
4352306 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.64 46.0 3.58e-01 77.1% 94.3%
3344177 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.63 36.0 3.68e-01 89.6% 55.6%
4939073 205.1.1.131 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_9 0.62 47.0 4.43e-01 95.8% 66.7%
5004012 2004.1.1.714 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_13 0.61 51.0 3.16e-01 100.0% 46.3%
3483955 386.1.1.6 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.61 42.0 3.57e-01 75.0% 47.1%
3580596 330.1.1.17 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm_Ferlin 0.60 47.0 3.71e-01 95.8% 68.3%
2067589 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.60 48.0 3.85e-01 97.9% 81.1%
4082864 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 48.0 3.94e-01 100.0% 100.0%
3389678 3006.1.1.3 a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › AD 0.59 47.0 3.94e-01 100.0% 68.0%
None 0.59 49.0 3.26e-01 100.0% 38.8%
4435772 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.57 45.0 3.52e-01 91.7% 89.4%
4182095 2004.1.1.80 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.57 48.0 3.16e-01 100.0% 31.6%
3603014 304.28.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.57 44.0 3.76e-01 91.7% 50.6%
4939460 205.1.1.131 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_9 0.56 42.0 3.61e-01 83.3% 58.7%
4306728 205.1.1.41 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4, Fer4_10 0.56 41.0 3.26e-01 93.8% 36.7%
3280548 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.56 38.0 3.27e-01 70.8% 95.0%
4507561 3012.1.1.9 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › SecD_1st 0.56 39.0 2.89e-01 79.2% 36.8%
3997731 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.56 44.0 3.85e-01 95.8% 56.2%
4177884 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 44.0 3.79e-01 95.8% 95.5%
3385884 2003.1.15.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Glycosyltransferase Maf N-terminal domain › Maf_flag10_N 0.56 45.0 3.14e-01 97.9% 69.5%
4951629 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.56 38.0 3.08e-01 70.8% 53.7%
3250677 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.55 44.0 2.96e-01 91.7% 65.5%
3931130 4300.1.1.0 beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like 0.55 38.0 2.76e-01 97.9% 23.3%
5065439 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.54 45.0 3.22e-01 100.0% 87.9%
4065299 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.54 43.0 3.80e-01 91.7% 70.7%
3740340 59.1.1.0 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.54 38.0 3.34e-01 79.2% 93.8%
3458143 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.54 43.0 3.32e-01 100.0% 63.0%
3927790 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 39.0 3.99e-01 93.8% 88.9%
2870509 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.54 43.0 3.46e-01 100.0% 85.8%
2429491 205.1.1.23 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Nqo3_Fer4 0.53 43.0 3.74e-01 97.9% 57.8%
5038997 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.53 40.0 3.73e-01 95.8% 64.6%
4338727 3016.1.1.10 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.53 43.0 3.86e-01 97.9% 100.0%
5019046 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.53 40.0 3.90e-01 83.3% 89.1%
4201723 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.53 39.0 3.92e-01 83.3% 80.0%
5057765 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.53 46.0 3.92e-01 100.0% 81.2%
3833116 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 3.27e-01 100.0% 42.0%
3595168 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 46.0 3.53e-01 100.0% 80.0%
4099043 304.28.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.52 40.0 3.54e-01 87.5% 58.7%
4955583 205.1.1.16 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.52 40.0 3.59e-01 100.0% 57.3%
3973202 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.52 44.0 3.34e-01 100.0% 63.3%
5048989 109.4.1.3619 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TT21_C 0.52 42.0 2.59e-01 89.6% 26.0%
5073781 219.1.1.153 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N 0.52 43.0 2.94e-01 100.0% 45.6%
4947949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.24e-01 100.0% 44.4%
4682115 304.28.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.51 39.0 3.32e-01 91.7% 47.8%
3752375 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.51 39.0 2.66e-01 87.5% 22.1%
3329738 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 37.0 3.30e-01 87.5% 61.2%
4223749 3016.1.1.19 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C 0.51 43.0 4.00e-01 100.0% 76.6%
5046131 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.11e-01 85.4% 41.0%
3527488 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.51 38.0 2.66e-01 87.5% 30.5%
3992641 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.51 38.0 3.54e-01 93.8% 85.7%
3961033 304.154.1.1 a+b two layers › Alpha-beta plaits › Regulator of polyketide synthase expression N-terminal domain › Regulator of polyketide synthase expression N-terminal domain › GGDEF_2 0.51 39.0 2.87e-01 89.6% 58.7%
3164241 304.28.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.51 39.0 3.29e-01 91.7% 47.8%
4946049 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.51 37.0 3.26e-01 83.3% 85.0%
3179975 327.11.2.44 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF28723 0.51 38.0 3.50e-01 93.8% 69.3%
5050934 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.50 41.0 3.80e-01 95.8% 75.4%